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Platform GPL3718 Query DataSets for GPL3718
Status Public on May 13, 2006
Title [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

The GeneChip® Human Mapping 500K Array Set provides consistently high coverage across different populations. It is comprised of two arrays, each capable of genotyping on average 250,000 SNPs (approximately 262,000 for Nsp arrays and 238,000 for Sty arrays).
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=500k
http://www.affymetrix.com/analysis/index.affx
Submission date May 02, 2006
Last update date May 17, 2017
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (11192) GSM116887, GSM116888, GSM116889, GSM116890, GSM116891, GSM116892 
Series (193)
GSE5173 Global variation of copy number in the human genome_COMM
GSE7255 Genomic profiling data of 40 childhood leukemia patients
GSE7545 Affymetrix 500K Mapping Array data from breast tumors

Data table header descriptions
ID Affymetrix Probe Set ID
Affy SNP ID
dbSNP RS ID refSNP ID
Chromosome
Genome Version
DB SNP Version
Physical Position
Strand
ChrX pseudo-autosomal region
Cytoband
SEQUENCE Flanking sequence
Allele A
Allele B
Associated Gene
Genetic Map
Microsatellite
Fragment Length Start Stop
Freq Asian
Freq AfAm
Freq Cauc
Het Asian
Het AfAm
Het Cauc
af asian called
af afam called
af cauc called
SPOT_ID

Data table
ID Affy SNP ID dbSNP RS ID Chromosome Genome Version DB SNP Version Physical Position Strand ChrX pseudo-autosomal region Cytoband SEQUENCE Allele A Allele B Associated Gene Genetic Map Microsatellite Fragment Length Start Stop Freq Asian Freq AfAm Freq Cauc Het Asian Het AfAm Het Cauc af asian called af afam called af cauc called SPOT_ID
SNP_A-1780619 10004759 rs17106009 1 NCBI Build 35, May 2004 123, October 2004 50373158 - 0 p33 ggatattgtgtgagga[A/G]taagcccacctgtggt A G ENST00000323186 // intron // 0 // --- // --- // --- // ELAV-like protein 4 (Paraneoplastic encephalomyelitis antigen HuD) (Hu-antigen D). [Source:Uniprot/SWISSPROT;Acc:P26378] /// ENST00000357083 // intron // 0 // --- // --- // --- // ELAV-like protein 4 (Paraneoplastic encephalomyelitis antigen HuD) (Hu-antigen D). [Source:Uniprot/SWISSPROT;Acc:P26378] 72.030224900657 // D1S2824 // D1S197 // --- // --- /// 76.284226409768 // D1S2706 // D1S2661 // AFMA337WC1 // AFMA203YE9 /// 68.1623209840695 // --- // --- // 59969 // 770243 D1S2155 // upstream // 9149 /// D1S1559 // downstream // 52144 574 // 50372910 // 50373483 0.0 // 1.0 // Chinese /// 0.0 // 1.0 // Japanese 0.022222 // 0.977778 // Yoruba 0.010204 // 0.989796 // Caucasian 0.0 // Chinese /// 0.0 // Japanese 0.043457 // Yoruba 0.0202 // Caucasian 45.0 /// 45.0 45.0 49.0
SNP_A-1780618 10004754 rs233978 4 NCBI Build 35, May 2004 123, October 2004 105033116 + 0 q24 ggatattgtccctggg[A/G]atggccttatttatct A G NM_001059 // upstream // 34539 // Hs.942 // TACR3 // 6870 // Homo sapiens tachykinin receptor 3 (TACR3), mRNA. /// NM_025212 // downstream // 714054 // Hs.12248 // CXXC4 // 80319 // Homo sapiens CXXC finger 4 (CXXC4), mRNA. /// ENST00000304883 // upstream // 34539 // --- // --- // --- // Neuromedin K receptor (NKR) (Neurokinin B receptor) (NK-3 receptor) (NK-3R) (Tachykinin receptor 3). [Source:Uniprot/SWISSPROT;A /// ENST00000305749 // downstream // 714054 // --- // --- // --- // CXXC finger 4 [Source:RefSeq_peptide;Acc:NP_079488] 108.086324698038 // D4S1572 // D4S2913 // --- // --- /// 107.781224080953 // D4S1591 // D4S2907 // AFM291ZD1 // AFMA108ZC5 /// 105.84222066207 // --- // --- // 571244 // 798293 D4S1344 // upstream // 103722 /// D4S2650 // downstream // 90282 700 // 105032967 // 105033666 0.366667 // 0.633333 // Chinese /// 0.322222 // 0.677778 // Japanese 0.2 // 0.8 // Yoruba 0.38 // 0.62 // Caucasian 0.464444 // Chinese /// 0.43679 // Japanese 0.32 // Yoruba 0.4712 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780617 10004744 rs9965312 18 NCBI Build 35, May 2004 123, October 2004 24853920 + 0 q12.1 ggatattggttgctct[C/T]accttaaagactgttt C T NM_001792 // upstream // 842731 // Hs.464829 // CDH2 // 1000 // Homo sapiens cadherin 2, type 1, N-cadherin (neuronal) (CDH2), mRNA. /// NM_001941 // downstream // 1971109 // Hs.41690 // DSC3 // 1825 // Homo sapiens desmocollin 3 (DSC3), transcript variant Dsc3a, mRNA. /// NM_024423 // downstream // 1974514 // Hs.41690 // DSC3 // 1825 // Homo sapiens desmocollin 3 (DSC3), transcript variant Dsc3b, mRNA. /// ENST00000269141 // upstream // 842731 // --- // --- // --- // Neural-cadherin precursor (N-cadherin) (Cadherin-2) (CDw325 antigen). [Source:Uniprot/SWISSPROT;Acc:P19022] /// ENST00000360428 // downstream // 1971109 // --- // --- // --- // Desmocollin-3 precursor (Desmocollin-4) (HT-CP). [Source:Uniprot/SWISSPROT;Acc:Q14574] /// ENST00000343082 // downstream // 1971109 // --- // --- // --- // --- /// ENST00000356582 // downstream // 1974514 // --- // --- // --- // Desmocollin-3 precursor (Desmocollin-4) (HT-CP). [Source:Uniprot/SWISSPROT;Acc:Q14574] 52.2532540364436 // D18S1151 // D18S877 // --- // --- /// 54.2778709546567 // D18S478 // D18S877 // AFM311WE5 // GATA64H04 /// 54.3607333406891 // --- // --- // 484788 // 149765 D18S877 // upstream // 125121 /// D18S1290 // downstream // 6126 580 // 24853866 // 24854445 0.431818 // 0.568182 // Chinese /// 0.366667 // 0.633333 // Japanese 0.42 // 0.58 // Yoruba 0.21 // 0.79 // Caucasian 0.490702 // Chinese /// 0.464444 // Japanese 0.4872 // Yoruba 0.3318 // Caucasian 44.0 /// 45.0 50.0 50.0
SNP_A-1780778 10008343 rs251292 5 NCBI Build 35, May 2004 123, October 2004 65226382 + 0 q12.3 ggatctaaggttgaaa[A/T]catctaatccctaggt A T NM_001006600 // upstream // 31758 // Hs.519346 // ERBB2IP // 55914 // Homo sapiens erbb2 interacting protein (ERBB2IP), transcript variant 7, mRNA. /// NM_018695 // upstream // 31758 // Hs.519346 // ERBB2IP // 55914 // Homo sapiens erbb2 interacting protein (ERBB2IP), transcript variant 2, mRNA. /// AF263744 // upstream // 31923 // Hs.519346 // ERBB2IP // 55914 // Homo sapiens erbb2-interacting protein ERBIN mRNA, complete cds. /// NM_020726 // downstream // 67887 // Hs.247460 // NLN // 57486 // Homo sapiens neurolysin (metallopeptidase M3 family) (NLN), mRNA. /// ENST00000284037 // upstream // 31758 // --- // --- // --- // LAP2 protein (Erbb2-interacting protein) (Erbin) (Densin-180-like protein). [Source:Uniprot/SWISSPROT;Acc:Q96RT1] /// ENST00000230768 // upstream // 31923 // --- // --- // --- // LAP2 protein (Erbb2-interacting protein) (Erbin) (Densin-180-like protein). [Source:Uniprot/SWISSPROT;Acc:Q96RT1] /// ENST00000340159 // downstream // 67887 // --- // --- // --- // Neurolysin, mitochondrial precursor (EC 3.4.24.16) (Neurotensin endopeptidase) (Mitochondrial oligopeptidase M) (Microsomal endo 78.336700651046 // D5S2858 // D5S616 // --- // --- /// 73.0025090179238 // D5S1990 // D5S2121 // AFMA247YH9 // AFMA103ZB9 /// 70.7940736758554 // --- // --- // 231698 // 281541 DXS6792 // upstream // 8055 /// D5S2565 // downstream // 60957 631 // 65226017 // 65226647 0.777778 // 0.222222 // Chinese /// 0.666667 // 0.333333 // Japanese 0.25 // 0.75 // Yoruba 0.416667 // 0.583333 // Caucasian 0.345679 // Chinese /// 0.444444 // Japanese 0.375 // Yoruba 0.486111 // Caucasian 45.0 /// 45.0 50.0 48.0
SNP_A-1780616 10004728 --- 12 NCBI Build 35, May 2004 123, October 2004 91524142 + 0 q22 ggatattggtcattaa[A/T]acctttctaacttaat A T NM_001004330 // upstream // 108637 // Hs.506309 // FLJ46688 // 440107 // Homo sapiens FLJ46688 protein (FLJ46688), mRNA. /// NM_001731 // upstream // 482054 // Hs.255935 // BTG1 // 694 // Homo sapiens B-cell translocation gene 1, anti-proliferative (BTG1), mRNA. /// ENST00000344636 // upstream // 108637 // --- // --- // --- // --- /// ENST00000256015 // upstream // 482054 // --- // --- // --- // BTG1 protein (B-cell translocation gene 1 protein). [Source:Uniprot/SWISSPROT;Acc:P62324] 102.6944788942 // D12S95 // D12S1345 // --- // --- /// 96.0671671926733 // D12S1064 // D12S1345 // GATA63D12 // AFM077YC1 /// 95.1950023500647 // --- // --- // 729058 // 356510 D12S1345 // upstream // 48396 /// D12S1433 // downstream // 4964 666 // 91523851 // 91524516 0.966667 // 0.033333 // Chinese /// 0.918605 // 0.081395 // Japanese 1.0 // 0.0 // Yoruba 0.858696 // 0.141304 // Caucasian 0.064444 // Chinese /// 0.14954 // Japanese 0.0 // Yoruba 0.242675 // Caucasian 45.0 /// 43.0 50.0 46.0
SNP_A-1780613 10004709 rs1705415 12 NCBI Build 35, May 2004 123, October 2004 25562333 + 0 p12.1 ggatattgctggtgta[C/T]taaacaggctttctcc C T NM_152590 // intron // 0 // Hs.44647 // FLJ36004 // 160492 // Homo sapiens likely ortholog of mouse Pas1 candidate 1 (FLJ36004), mRNA. /// ENST00000282881 // intron // 0 // --- // --- // --- // --- 47.2127875126134 // D12S1617 // D12S1596 // --- // --- /// 44.9234402983068 // D12S1617 // D12S823 // AFMA223YG1 // UT5561 /// 45.3003830332468 // --- // D12S1042 // 737330 // --- D12S1313 // upstream // 106628 /// D12S1350E // downstream // 410072 1060 // 25561881 // 25562940 0.122222 // 0.877778 // Chinese /// 0.066667 // 0.933333 // Japanese 0.520408 // 0.479592 // Yoruba 0.14 // 0.86 // Caucasian 0.214568 // Chinese /// 0.124444 // Japanese 0.499167 // Yoruba 0.2408 // Caucasian 45.0 /// 45.0 49.0 50.0
SNP_A-1780419 10002027 rs6576700 1 NCBI Build 35, May 2004 123, October 2004 84587194 - 0 p31.1 ggatacattttattgc[A/G]cttgcagagtattttt A G NM_021233 // intron // 0 // Hs.129142 // DNASE2B // 58511 // Homo sapiens deoxyribonuclease II beta (DNASE2B), transcript variant 1, mRNA. /// NM_058248 // intron // 0 // Hs.129142 // DNASE2B // 58511 // Homo sapiens deoxyribonuclease II beta (DNASE2B), transcript variant 2, mRNA. /// ENST00000260542 // intron // 0 // --- // --- // --- // Deoxyribonuclease II beta precursor (EC 3.1.22.1) (DNase II beta) (DNase2-like acid DNase) (DNase II-like acid DNase) (Endonucle 108.402547694204 // D1S2889 // D1S2766 // --- // --- /// 116.765222864103 // D1S2889 // D1S2766 // AFMA081XE9 // AFMB320YF1 /// 102.949459154945 // --- // --- // 55476 // 615456 D1S2362 // upstream // 234987 /// D1S2889 // downstream // 39379 798 // 84586570 // 84587367 0.6 // 0.4 // Chinese /// 0.622222 // 0.377778 // Japanese 0.51 // 0.49 // Yoruba 0.530612 // 0.469388 // Caucasian 0.48 // Chinese /// 0.470123 // Japanese 0.4998 // Yoruba 0.498126 // Caucasian 45.0 /// 45.0 50.0 49.0
SNP_A-1780612 10004697 rs4501824 1 NCBI Build 35, May 2004 123, October 2004 189321075 + 0 q31.2 ggatattgccacttga[C/G]aaaggattatttactg C G NM_144766 // upstream // 15879 // Hs.497220 // RGS13 // 6003 // Homo sapiens regulator of G-protein signalling 13 (RGS13), transcript variant 2, mRNA. /// NM_002927 // upstream // 15879 // Hs.497220 // RGS13 // 6003 // Homo sapiens regulator of G-protein signalling 13 (RGS13), transcript variant 1, mRNA. /// NM_002922 // downstream // 40266 // Hs.75256 // RGS1 // 5996 // Homo sapiens regulator of G-protein signalling 1 (RGS1), mRNA. /// ENST00000247523 // upstream // 15879 // --- // --- // --- // Regulator of G-protein signaling 13 (RGS13). [Source:Uniprot/SWISSPROT;Acc:O14921] /// ENST00000204113 // downstream // 40266 // --- // --- // --- // Regulator of G-protein signaling 1 (RGS1) (Early response protein 1R20) (B-cell activation protein BL34). [Source:Uniprot/SWISSP 190.808469601499 // D1S2625 // D1S2757 // --- // --- /// 206.516105355212 // D1S2625 // D1S2794 // AFMA124ZD9 // AFMB354ZE1 /// 189.932313749198 // --- // --- // 596614 // 836891 D1S2462 // upstream // 57450 /// D1S3256 // downstream // 40966 842 // 189320799 // 189321640 0.488889 // 0.511111 // Chinese /// 0.522222 // 0.477778 // Japanese 0.38 // 0.62 // Yoruba 0.45 // 0.55 // Caucasian 0.499753 // Chinese /// 0.499012 // Japanese 0.4712 // Yoruba 0.495 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780418 10002001 rs17054099 5 NCBI Build 35, May 2004 123, October 2004 156323558 - 0 q33.3 ggatacattacccaaa[C/T]ggtcacaggtcaaagg C T NM_138379 // upstream // 714 // Hs.334907 // TIMD4 // 91937 // Homo sapiens T-cell immunoglobulin and mucin domain containing 4 (TIMD4), mRNA. /// NM_012206 // downstream // 65551 // Hs.129711 // HAVCR1 // 26762 // Homo sapiens hepatitis A virus cellular receptor 1 (HAVCR1), mRNA. /// ENST00000274532 // upstream // 714 // --- // --- // --- // T cell immunoglobulin and mucin domain-containing protein 4 precursor (TIMD-4) (T cell membrane protein 4) (TIM-4). [Source:Unip /// ENST00000339252 // downstream // 65551 // --- // --- // --- // Hepatitis A virus cellular receptor 1 precursor (HAVcr-1) (T cell immunoglobulin and mucin domain-containing protein 1) (TIMD-1) 161.231323294181 // D5S820 // D5S2049 // --- // --- /// 159.37910567766 // D5S1499 // D5S1403 // GATA51G10 // UT8057 /// 154.762533280549 // --- // --- // 157925 // 272584 D5S2112 // upstream // 291875 /// D5S2417 // downstream // 196993 822 // 156323187 // 156324008 0.966667 // 0.033333 // Chinese /// 1.0 // 0.0 // Japanese 0.833333 // 0.166667 // Yoruba 1.0 // 0.0 // Caucasian 0.064444 // Chinese /// 0.0 // Japanese 0.277778 // Yoruba 0.0 // Caucasian 45.0 /// 45.0 48.0 50.0
SNP_A-1780611 10004672 rs7660291 4 NCBI Build 35, May 2004 123, October 2004 74265417 - 0 q13.3 ggatattgagagttca[A/T]tcccagaccaccacaa A T NM_173827 // downstream // 21422 // Hs.356697 // FLJ38991 // 285521 // Homo sapiens mitochondrial COX18 (FLJ38991), mRNA. /// NM_001033760 // downstream // 21422 // Hs.356697 // FLJ38991 // 285521 // --- /// NM_014243 // upstream // 465866 // Hs.567395 // ADAMTS3 // 9508 // Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 3 (ADAMTS3), mRNA. /// ENST00000295890 // downstream // 21422 // --- // --- // --- // Probable inner membrane protein OXA1L2, mitochondrial precursor. [Source:Uniprot/SWISSPROT;Acc:Q8N8Q8] /// ENST00000286657 // upstream // 465866 // --- // --- // --- // ADAMTS-3 precursor (EC 3.4.24.-) (A disintegrin and metalloproteinase with thrombospondin motifs 3) (ADAM-TS 3) (ADAM-TS3) (Proc 82.9843790042536 // D4S2389 // D4S1517 // --- // --- /// 80.7087046449641 // D4S2389 // D4S2990 // ATA22B11 // AFMB347ZH1 /// 77.526472219467 // --- // --- // 705790 // 273145 D4S2641 // upstream // 139303 /// D4S1040 // downstream // 172424 608 // 74265082 // 74265689 0.0 // 1.0 // Chinese /// 0.0 // 1.0 // Japanese 0.102041 // 0.897959 // Yoruba 0.0 // 1.0 // Caucasian 0.0 // Chinese /// 0.0 // Japanese 0.183257 // Yoruba 0.0 // Caucasian 38.0 /// 45.0 49.0 45.0
SNP_A-1780610 10004671 rs1340013 9 NCBI Build 35, May 2004 123, October 2004 1288487 + 0 p24.3 ggatattgagagctga[C/T]gccttctacccaaagg C T NM_181872 // downstream // 240945 // Hs.59506 // DMRT2 // 10655 // Homo sapiens doublesex and mab-3 related transcription factor 2 (DMRT2), transcript variant 2, mRNA. /// NM_006557 // downstream // 240937 // Hs.59506 // DMRT2 // 10655 // Homo sapiens doublesex and mab-3 related transcription factor 2 (DMRT2), transcript variant 1, mRNA. /// AF284223 // downstream // 240937 // Hs.59506 // DMRT2 // 10655 // Homo sapiens DMRT2 and terra-like protein (DMRT2) bicistronic mRNA, complete cds, alternatively spliced. /// NM_139045 // upstream // 716732 // Hs.298990 // SMARCA2 // 6595 // Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 (SMARCA2), transc /// NM_003070 // upstream // 716855 // Hs.298990 // SMARCA2 // 6595 // Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 (SMARCA2), transc /// ENST00000302441 // downstream // 240945 // --- // --- // --- // Doublesex- and mab-3-related transcription factor 2 (Doublesex-like 2 protein) (DSXL-2). [Source:Uniprot/SWISSPROT;Acc:Q9Y5R5] /// ENST00000259622 // downstream // 240937 // --- // --- // --- // Doublesex- and mab-3-related transcription factor 2 (Doublesex-like 2 protein) (DSXL-2). [Source:Uniprot/SWISSPROT;Acc:Q9Y5R5] /// ENST00000358146 // downstream // 240937 // --- // --- // --- // Doublesex- and mab-3-related transcription factor 2 (Doublesex-like 2 protein) (DSXL-2). [Source:Uniprot/SWISSPROT;Acc:Q9Y5R5] /// ENST00000357248 // upstream // 716732 // --- // --- // --- // Possible global transcription activator SNF2L2 (EC 3.6.1.-) (ATP- dependent helicase SMARCA2) (SNF2-alpha) (SWI/SNF-related matr /// ENST00000302401 // upstream // 859969 // --- // --- // --- // Possible global transcription activator SNF2L2 (EC 3.6.1.-) (ATP- dependent helicase SMARCA2) (SNF2-alpha) (SWI/SNF-related matr /// ENST00000349721 // upstream // 716855 // --- // --- // --- // Possible global transcription activator SNF2L2 (EC 3.6.1.-) (ATP- dependent helicase SMARCA2) (SNF2-alpha) (SWI/SNF-related matr 1.98740609553776 // D9S1858 // D9S54 // --- // --- /// 3.07295703495896 // --- // D9S54 // --- // MFD141 /// 6.55737825232446 // --- // --- // --- // 820933 D9S1919 // upstream // 321968 /// D9S957 // downstream // 36343 599 // 1288016 // 1288614 1.0 // 0.0 // Chinese /// 1.0 // 0.0 // Japanese 0.84 // 0.16 // Yoruba 1.0 // 0.0 // Caucasian 0.0 // Chinese /// 0.0 // Japanese 0.2688 // Yoruba 0.0 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780415 10001900 rs7730126 5 NCBI Build 35, May 2004 123, October 2004 158662525 - 0 q33.3 ggatacatccccccca[A/G]aaaatgagaataaagc A G NM_145049 // downstream // 16908 // Hs.134812 // UBLCP1 // 134510 // Homo sapiens ubiquitin-like domain containing CTD phosphatase 1 (UBLCP1), mRNA. /// NM_002187 // downstream // 11844 // Hs.674 // IL12B // 3593 // Homo sapiens interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40) (IL12B), /// ENST00000296786 // downstream // 16908 // --- // --- // --- // ubiquitin-like domain containing CTD phosphatase 1 [Source:RefSeq_peptide;Acc:NP_659486] /// ENST00000231228 // downstream // 11844 // --- // --- // --- // Interleukin-12 beta chain precursor (IL-12B) (IL-12 p40) (Cytotoxic lymphocyte maturation factor 40 kDa subunit) (CLMF p40) (NK 162.620806994332 // D5S1352 // D5S403 // --- // --- /// 162.037128151922 // D5S1971 // D5S2093 // AFMA184WD5 // AFMA053YF1 /// 156.668365937775 // D5S1971 // --- // --- // 626279 D5S2582 // upstream // 87970 /// D5S1352 // downstream // 105043 379 // 158662354 // 158662732 0.244444 // 0.755556 // Chinese /// 0.222222 // 0.777778 // Japanese 0.2 // 0.8 // Yoruba 0.22 // 0.78 // Caucasian 0.369383 // Chinese /// 0.345679 // Japanese 0.32 // Yoruba 0.3432 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780576 10004204 rs6675133 1 NCBI Build 35, May 2004 123, October 2004 97065662 + 0 p21.3 ggatatgcagttgaaa[C/T]atctatggaaattatc C T NM_000110 // downstream // 189661 // Hs.335034 // DPYD // 1806 // Homo sapiens dihydropyrimidine dehydrogenase (DPYD), mRNA. /// NM_021190 // downstream // 73294 // Hs.269895 // PTBP2 // 58155 // Homo sapiens polypyrimidine tract binding protein 2 (PTBP2), mRNA. /// ENST00000271131 // downstream // 189661 // --- // --- // --- // Dihydropyrimidine dehydrogenase [NADP+] precursor (EC 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine de /// ENST00000236228 // downstream // 73294 // --- // --- // --- // polypyrimidine tract binding protein 2 [Source:RefSeq_peptide;Acc:NP_067013] /// ENST00000306031 // downstream // 831674 // --- // --- // --- // Dihydropyrimidine dehydrogenase [NADP+] precursor (EC 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine de 119.382918462232 // D1S1163 // D1S415 // --- // --- /// 127.69713149738 // D1S2627 // D1S1587 // AFMA125YC1 // ATA1D01 /// 113.536347697359 // --- // D1S497 // 45750 // --- D1S497 // upstream // 637592 /// D1S1163 // downstream // 122599 986 // 97065159 // 97066144 0.266667 // 0.733333 // Chinese /// 0.322222 // 0.677778 // Japanese 0.22 // 0.78 // Yoruba 0.04 // 0.96 // Caucasian 0.391111 // Chinese /// 0.43679 // Japanese 0.3432 // Yoruba 0.0768 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780413 10001878 rs10834942 11 NCBI Build 35, May 2004 123, October 2004 26257545 + 0 p14.2 ggatacataattgtaa[A/G]gaactttgcaaatcat A G NM_145650 // downstream // 279611 // Hs.407152 // MUC15 // 143662 // Homo sapiens mucin 15 (MUC15), mRNA. /// NM_031418 // upstream // 52002 // Hs.91791 // TMEM16C // 63982 // Homo sapiens transmembrane protein 16C (TMEM16C), mRNA. /// ENST00000329893 // downstream // 281643 // --- // --- // --- // Mucin-15 precursor. [Source:Uniprot/SWISSPROT;Acc:Q8N387] /// ENST00000278194 // upstream // 690628 // --- // --- // --- // --- /// ENST00000303642 // downstream // 279611 // --- // --- // --- // Mucin-15 precursor. [Source:Uniprot/SWISSPROT;Acc:Q8N387] /// ENST00000256737 // upstream // 52002 // --- // --- // --- // Transmembrane protein 16C. [Source:Uniprot/SWISSPROT;Acc:Q9BYT9] 43.2004618152885 // D11S4204 // D11S2364 // --- // --- /// 32.4793632094595 // D11S4114 // D11S1750 // AFMA272ZE9 // AFM093XG9 /// 34.8443702492746 // D11S4080 // --- // --- // 296033 D11S1906 // upstream // 36149 /// D11S930 // downstream // 5879 923 // 26257364 // 26258286 0.931818 // 0.068182 // Chinese /// 0.9 // 0.1 // Japanese 0.540816 // 0.459184 // Yoruba 0.836735 // 0.163265 // Caucasian 0.127066 // Chinese /// 0.18 // Japanese 0.496668 // Yoruba 0.273219 // Caucasian 44.0 /// 45.0 49.0 49.0
SNP_A-1780412 10001874 rs17419765 5 NCBI Build 35, May 2004 123, October 2004 123106484 + 0 q23.2 ggatacataatagata[C/T]gcgatattaaatagat C T NM_020747 // downstream // 894025 // Hs.266616 // ZNF608 // 57507 // Homo sapiens zinc finger protein 608 (ZNF608), mRNA. /// NM_001031812 // downstream // 128495 // Hs.129206 // CSNK1G3 // 1456 // Homo sapiens casein kinase 1, gamma 3 (CSNK1G3), transcript variant 2, mRNA. /// ENST00000357456 // downstream // 127445 // --- // --- // --- // --- /// ENST00000306315 // downstream // 894025 // --- // --- // --- // zinc finger protein 608 [Source:RefSeq_peptide;Acc:NP_065798] /// ENST00000360683 // downstream // 127437 // --- // --- // --- // Casein kinase I, gamma 3 isoform (EC 2.7.1.-) (CKI-gamma 3). [Source:Uniprot/SWISSPROT;Acc:Q9Y6M4] /// ENST00000345990 // downstream // 128495 // --- // --- // --- // Casein kinase I, gamma 3 isoform (EC 2.7.1.-) (CKI-gamma 3). [Source:Uniprot/SWISSPROT;Acc:Q9Y6M4] 127.289670065713 // D5S1975 // D5S818 // --- // --- /// 130.92084120876 // D5S622 // D5S2020 // AFM205ZD4 // AFMB283ZD1 /// 127.316763731594 // --- // --- // 624250 // 273421 D5S2020 // upstream // 19345 /// D5S1902 // downstream // 51603 920 // 123106128 // 123107047 0.066667 // 0.933333 // Chinese /// 0.111111 // 0.888889 // Japanese 0.15 // 0.85 // Yoruba 0.163265 // 0.836735 // Caucasian 0.124444 // Chinese /// 0.197531 // Japanese 0.255 // Yoruba 0.273219 // Caucasian 45.0 /// 45.0 50.0 49.0
SNP_A-1780574 10004155 rs12233450 3 NCBI Build 35, May 2004 123, October 2004 144909738 - 0 q24 ggatatgatagacaca[A/C]aatcaggatgccgagt A C NM_173653 // intron // 0 // Hs.302257 // SLC9A9 // 285195 // Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger), member 9 (SLC9A9), mRNA. /// ENST00000316549 // intron // 0 // --- // --- // --- // Sodium/hydrogen exchanger 9 (Na(+)/H(+) exchanger 9) (NHE-9) (Solute carrier family 9 member 9). [Source:Uniprot/SWISSPROT;Acc:Q 150.666286650988 // D3S3599 // D3S1550 // --- // --- /// 155.546361894387 // D3S3546 // D3S1744 // AFMA106YF9 // GATA3C02 /// 147.632845588516 // --- // --- // 45364 // 860949 D4S2378 // upstream // 321566 /// D3S3599 // downstream // 52543 737 // 144909664 // 144910400 0.588889 // 0.411111 // Chinese /// 0.544444 // 0.455556 // Japanese 0.03 // 0.97 // Yoruba 0.12 // 0.88 // Caucasian 0.484198 // Chinese /// 0.496049 // Japanese 0.0582 // Yoruba 0.2112 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780379 10001455 rs7995987 13 NCBI Build 35, May 2004 123, October 2004 76334809 + 0 q22.3 ggataattgcattgaa[G/T]tagttgtacaaaaaaa G T NM_138444 // downstream // 19180 // Hs.109438 // KCTD12 // 115207 // Homo sapiens potassium channel tetramerisation domain containing 12 (KCTD12), mRNA. /// ENST00000318245 // downstream // 979570 // --- // --- // --- // --- /// ENST00000317765 // downstream // 19180 // --- // --- // --- // Potassium channel tetramerisation domain containing protein 12 (Pfetin) (Predominantly fetal expressed T1 domain). [Source:Unipr 72.4507520730385 // D13S162 // D13S1812 // --- // --- /// 59.7393441785351 // D13S162 // D13S160 // AFM190XA1 // AFM157XA11 /// 59.6718201889089 // --- // --- // 991247 // 815067 D13S1684 // upstream // 17502 /// D13S1010 // downstream // 74847 575 // 76334327 // 76334901 0.232558 // 0.767442 // Chinese /// 0.144444 // 0.855556 // Japanese 0.244186 // 0.755814 // Yoruba 0.25 // 0.75 // Caucasian 0.35695 // Chinese /// 0.24716 // Japanese 0.369118 // Yoruba 0.375 // Caucasian 43.0 /// 45.0 43.0 48.0
SNP_A-1780572 10004130 rs10091369 8 NCBI Build 35, May 2004 123, October 2004 12915299 - 0 p22 ggatatgagaaacaca[C/T]tccctagactcatgaa C T NM_020844 // intron // 0 // Hs.491087 // KIAA1456 // 57604 // Homo sapiens KIAA1456 protein (KIAA1456), mRNA. /// ENST00000303854 // intron // 0 // --- // --- // --- // --- 23.7189191388835 // D8S1106 // GATA151F02 // --- // --- /// 26.6749130913609 // D8S552 // UNKNOWN // AFM320YF1 // GATA151F02 /// 24.8976779083044 // D8S503 // --- // --- // 781126 D8S1107 // upstream // 30915 /// D8S492 // downstream // 35131 807 // 12914536 // 12915342 0.292683 // 0.707317 // Chinese /// 0.215909 // 0.784091 // Japanese 0.326531 // 0.673469 // Yoruba 0.197917 // 0.802083 // Caucasian 0.414039 // Chinese /// 0.338585 // Japanese 0.439817 // Yoruba 0.317491 // Caucasian 41.0 /// 44.0 49.0 48.0
SNP_A-1780378 10001437 rs7828844 8 NCBI Build 35, May 2004 123, October 2004 119481632 - 0 q24.12 ggataattcgtgtcga[A/G]cacttatcacagtgcc A G NM_207506 // intron // 0 // Hs.492653 // SAMD12 // 401474 // Homo sapiens sterile alpha motif domain containing 12 (SAMD12), mRNA. /// ENST00000314727 // intron // 0 // --- // --- // --- // sterile alpha motif domain containing 12 [Source:RefSeq_peptide;Acc:NP_997389] 119.275532398441 // D8S527 // D8S1016 // --- // --- /// 125.227290728385 // UNKNOWN // D8S522 // GATA123H10 // AFM240WC9 /// 112.430115576225 // --- // D8S522 // 563867 // --- D8S1016 // upstream // 6648 /// D8S43 // downstream // 56604 552 // 119481546 // 119482097 0.0 // 1.0 // Chinese /// 0.0 // 1.0 // Japanese 0.083333 // 0.916667 // Yoruba 0.184783 // 0.815217 // Caucasian 0.0 // Chinese /// 0.0 // Japanese 0.152778 // Yoruba 0.301276 // Caucasian 45.0 /// 45.0 48.0 46.0
SNP_A-1780377 10001421 rs11040883 11 NCBI Build 35, May 2004 123, October 2004 6366366 + 0 p15.4 ggataattataatacc[A/G]acttccaaatttgttg A G ENST00000358946 // intron // 0 // --- // --- // --- // Amyloid beta A4 precursor protein-binding family B member 1 (Fe65 protein). [Source:Uniprot/SWISSPROT;Acc:O00213] 10.069054565366 // D11S1323 // D11S1331 // --- // --- /// 12.076511371105 // D11S1323 // D11S1996 // AFM248XF9 // ATA22H01 /// 7.46166278216338 // --- // --- // 517971 // 490436 D11S4426 // upstream // 6044 /// D11S4034 // downstream // 43276 608 // 6366246 // 6366853 0.0 // 1.0 // Chinese /// 0.0 // 1.0 // Japanese 0.142857 // 0.857143 // Yoruba 0.13 // 0.87 // Caucasian 0.0 // Chinese /// 0.0 // Japanese 0.244898 // Yoruba 0.2262 // Caucasian 45.0 /// 45.0 49.0 50.0

Total number of rows: 262338

Table truncated, full table size 331119 Kbytes.




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