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Sample GSM117011 Query DataSets for GSM117011
Status Public on Sep 30, 2006
Title NA18550_Nsp_COMM
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 2
Biomaterial provider Coriell NA18550 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18550
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 29, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotypes
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.007813 15.819 0.009278 0.003351
SNP_A-1780618 AA 0.023438 12.909 0.952933 0.997382
SNP_A-1780632 AB 0.039063 8.278 0.718593 0.492690
SNP_A-1780654 AA 0.007813 18.473 0.987195 0.952991
SNP_A-4192495 AB 0.023438 8.740 0.406475 0.429602
SNP_A-4192498 AB 0.266602 3.066 0.689433 0.773901
SNP_A-1780732 BB 0.015625 14.195 0.000000 0.000000
SNP_A-1780848 BB 0.023438 7.657 0.000000 0.182618
SNP_A-1780985 AB 0.015625 3.059 0.416321 0.564912
SNP_A-1781022 AB 0.250000 4.003 0.551663 0.606195
SNP_A-1781076 BB 0.187500 10.629 0.295956 0.000000
SNP_A-1781249 AA 0.023438 16.536 1.000000 0.920103
SNP_A-1781276 AB 0.007813 15.193 0.482318 0.533595
SNP_A-1781302 AA 0.023438 13.299 0.962963 0.913993
SNP_A-1781510 AB 0.007813 7.729 0.637833 0.765046
SNP_A-4192564 BB 0.007813 11.737 0.000000 0.047207
SNP_A-1781614 AB 0.187500 1.078 0.707143 0.670863
SNP_A-1781633 AA 0.007813 17.311 1.000000 1.000000
SNP_A-1781764 AB 0.007813 14.187 0.495943 0.411003
SNP_A-1781829 AA 0.023438 10.953 0.918502 0.918294

Total number of rows: 262264

Table truncated, full table size 12968 Kbytes.




Supplementary file Size Download File type/resource
GSM117011.CEL.gz 42.8 Mb (ftp)(http) CEL
GSM117011.raw.txt.gz 25.8 Mb (ftp)(http) TXT

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