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Series GSE29365 Query DataSets for GSE29365
Status Public on Jan 11, 2013
Title Whole genome scanning of lung tumors and mucosal biopsies on Affymetrix NspI-250K platform
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Matched normal lymph node, tumors and corresponding mucosal biopsies from 4 lung cancer patients were scrutinized on Affymetrix 250K-NspI array platform. Frequently deleted regions genes were identified based on the LOH call as per manufacturer's guidelines and normalization.
Frequently deleted genes in the tumors and mucosa were identified though this approach
Overall design Affymetrix 250K-NspI- SNP arrays were performed according to the manufacturer's directions on DNA extracted from lung cancer and corresponding mucosal biopsy specimens. LOH analysis was done to identify genes that are frequently deleted.
Contributor(s) Dasgupta S, Sidransky D
Citation(s) 22968441, 37310411
Submission date May 18, 2011
Last update date Jun 22, 2023
Contact name Santanu Dasgupta
Organization name Virginia Commonwealth University
Street address 1220 E Broad Street
City Richmond
State/province VA
ZIP/Postal code 23298
Country USA
Platforms (1)
GPL3718 [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array
Samples (25)
GSM725905 Patient 1, Normal lymph node
GSM725906 Patient 1, Carcinoma_1
GSM725907 Patient 1, Carcinoma_2
BioProject PRJNA140199

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29365_RAW.tar 651.0 Mb (http)(custom) TAR (of CEL, CHP, CNT)
Processed data included within Sample table
Processed data provided as supplementary file

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