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Sample GSM174849 Query DataSets for GSM174849
Status Public on May 01, 2007
Title 9264
Sample type genomic
 
Source name Bone marrow with 94% blasts
Organism Homo sapiens
Characteristics Immunotype: pre-B ALL; Age: 9.3 yrs; Gender: F
Extracted molecule genomic DNA
Extraction protocol QiaAmp purification kit (Qiagen)
Label biotin
Label protocol Biotinylated DNA was prepared according to the standard Affymetrix protocol from 250 ng genomic DNA (Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix).
 
Hybridization protocol Hybridizations were performed according to the standard Affymetrix protocol from 250 ng genomic DNA (Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix) using an Affymetrix hybridisation oven 640 and an Affymetrix Fluidic station 450.
Scan protocol Scanning performed according to the standard Affymetrix protocol from 250 ng genomic DNA (Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix) using an Affymetrix scanner 3000.
Description primary ALL diagnosis sample
Data processing copy number detection using CNAG2.0 software (http://www.genome.umin.jp/)
 
Submission date Mar 13, 2007
Last update date Mar 13, 2007
Contact name Roland P. Kuiper
E-mail(s) r.kuiper@antrg.umcn.nl, e.verwiel@antrg.umcn.nl
Phone +31243610868
Fax +31243668752
Organization name Radboud University Nijmegen Medical Centre
Department Human Genetics
Street address Geert Grooteplein 10
City Nijmegen
ZIP/Postal code 6525GA
Country Netherlands
 
Platform ID GPL3718
Series (1)
GSE7255 Genomic profiling data of 40 childhood leukemia patients

Data table header descriptions
ID_REF
VALUE Genotypes: AA, AB, BB, No Call
CONFIDENCE
RAS1 Relative allele signal for the data in the first probe group
RAS2 Relative allele signal for the data in the second probe group
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL

Data table
ID_REF VALUE CONFIDENCE RAS1 RAS2 P-VALUE AA P-VALUE AB P-VALUE BB P-VALUE NO CALL
AFFX-5Q-123 No Call 0 0 0 0 0 0 0
AFFX-5Q-456 No Call 0 0 0 0 0 0 0
AFFX-5Q-789 No Call 0 0 0 0 0 0 0
AFFX-5Q-ABC No Call 0 0 0 0 0 0 0
AFFX-barcodeA No Call 0 0 0 0 0 0 0
AFFX-barcodeB No Call 0 0 0 0 0 0 0
AFFX-barcodeC No Call 0 0 0 0 0 0 0
AFFX-barcodeD No Call 0 0 0 0 0 0 0
AFFX-barcodeE No Call 0 0 0 0 0 0 0
AFFX-barcodeF No Call 0 0 0 0 0 0 0
AFFX-barcodeG No Call 0 0 0 0 0 0 0
AFFX-barcodeH No Call 0 0 0 0 0 0 0
AFFX-barcodeI No Call 0 0 0 0 0 0 0
AFFX-barcodeJ No Call 0 0 0 0 0 0 0
AFFX-barcodeK No Call 0 0 0 0 0 0 0
AFFX-barcodeL No Call 0 0 0 0 0 0 0
AFFX-barcodeM No Call 0 0 0 0 0 0 0
AFFX-barcodeN No Call 0 0 0 0 0 0 0
AFFX-barcodeO No Call 0 0 0 0 0 0 0
AFFX-barcodeP No Call 0 0 0 0 0 0 0

Total number of rows: 262338

Table truncated, full table size 20309 Kbytes.




Supplementary file Size Download File type/resource
GSM174849.CEL.gz 26.5 Mb (ftp)(http) CEL
GSM174849.CHP.gz 604.5 Kb (ftp)(http) CHP
Processed data provided as supplementary file

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