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Sample GSM116906 Query DataSets for GSM116906
Status Public on Sep 30, 2006
Title NA10838_Nsp_COMM
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Male Cell lot number: 2
Biomaterial provider Coriell NA10838 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10838
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 29, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotypes
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.007813 8.180 0.075269 0.142647
SNP_A-1780618 BB 0.007813 19.624 0.013975 0.054585
SNP_A-1780632 AB 0.007813 8.542 0.592593 0.504525
SNP_A-1780654 AA 0.007813 18.414 0.987473 1.000000
SNP_A-4192495 AB 0.187500 2.518 0.602740 0.423408
SNP_A-4192498 BB 0.000488 14.457 0.000000 0.000000
SNP_A-1780732 BB 0.015625 12.563 0.000000 0.000000
SNP_A-1780848 BB 0.093750 2.227 0.000000 0.222015
SNP_A-1780985 BB 0.007813 8.806 0.000000 0.000000
SNP_A-1781022 AA 0.007813 8.216 1.000000 1.000000
SNP_A-1781076 BB 0.132813 8.763 0.259668 0.056923
SNP_A-1781249 AB 0.007813 4.988 0.556701 0.493197
SNP_A-1781276 AB 0.062500 6.382 0.438176 0.521739
SNP_A-1781302 BB 0.023438 10.260 0.088106 0.031161
SNP_A-1781510 AA 0.007813 28.741 0.976891 1.000000
SNP_A-4192564 BB 0.132813 4.763 0.099609 0.252809
SNP_A-1781614 AB 0.007813 13.041 0.624302 0.566502
SNP_A-1781633 AB 0.023438 13.129 0.478261 0.382979
SNP_A-1781764 AB 0.007813 13.619 0.524220 0.489822
SNP_A-1781829 AA 0.007813 5.714 0.874871 0.881443

Total number of rows: 262264

Table truncated, full table size 12935 Kbytes.




Supplementary file Size Download File type/resource
GSM116906.CEL.gz 40.2 Mb (ftp)(http) CEL
GSM116906.raw.txt.gz 23.6 Mb (ftp)(http) TXT

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