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Sample GSM116998 Query DataSets for GSM116998
Status Public on Sep 30, 2006
Title NA18517_Nsp_COMM
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 1
Biomaterial provider Coriell NA18517 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18517
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 29, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotypes
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.007813 13.265 0.101282 0.041389
SNP_A-1780618 BB 0.007813 20.373 0.000000 0.073917
SNP_A-1780632 AA 0.007813 11.135 0.921558 0.885686
SNP_A-1780654 AA 0.007813 16.446 0.953568 0.990455
SNP_A-4192495 BB 0.007813 14.828 0.004980 0.000000
SNP_A-4192498 AB 0.113281 3.738 0.198460 0.453445
SNP_A-1780732 BB 0.015625 16.174 0.000000 0.066472
SNP_A-1780848 AB 0.007813 13.464 0.551885 0.599099
SNP_A-1780985 BB 0.007813 12.388 0.000000 0.000000
SNP_A-1781022 AA 0.007813 9.572 1.000000 1.000000
SNP_A-1781076 AA 0.007813 15.937 0.897076 0.988612
SNP_A-1781249 BB 0.007813 12.927 0.000000 0.018674
SNP_A-1781276 AA 0.093750 8.729 0.796092 0.940494
SNP_A-1781302 BB 0.007813 15.203 0.101439 0.002626
SNP_A-1781510 AA 0.007813 17.601 0.931760 1.000000
SNP_A-4192564 BB 0.007813 12.157 0.000000 0.000000
SNP_A-1781614 AA 0.007813 17.172 0.983425 0.954208
SNP_A-1781633 AA 0.007813 25.056 1.000000 1.000000
SNP_A-1781764 AB 0.007813 12.011 0.495711 0.333460
SNP_A-1781829 BB 0.007813 12.714 0.005285 0.115157

Total number of rows: 262264

Table truncated, full table size 12977 Kbytes.




Supplementary file Size Download File type/resource
GSM116998.CEL.gz 44.2 Mb (ftp)(http) CEL
GSM116998.raw.txt.gz 27.0 Mb (ftp)(http) TXT

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