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Series GSE28105 Query DataSets for GSE28105
Status Public on Jun 30, 2011
Title A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Mapping250K_Nsp)
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling.
 
Overall design 14 Samples
 
Contributor(s) Pinto D, MacDonald JR
Citation(s) 21552272
Submission date Mar 22, 2011
Last update date May 17, 2017
Contact name Stephen W Scherer
E-mail(s) stephen.scherer@sickkids.ca
Organization name The Hospital for Sick Children
Department Genetics and Genomic Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
 
Platforms (1)
GPL3718 [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array
Samples (14)
GSM696287 NA10851 rep1 genotyping at TCAG (Mapping250K_Nsp)
GSM696288 NA12239 rep1 genotyping at TCAG (Mapping250K_Nsp)
GSM696289 NA18576 rep1 genotyping at TCAG (Mapping250K_Nsp)
This SubSeries is part of SuperSeries:
GSE25893 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
Relations
BioProject PRJNA139691

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE28105_RAW.tar 424.5 Mb (http)(custom) TAR (of CEL, CHP, CNCHP)
Processed data provided as supplementary file
Processed data included within Sample table

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