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Sample GSM188025 Query DataSets for GSM188025
Status Public on Nov 02, 2007
Title Cell line derived germline DNA from human diversity panel (AFFY500KNSPSC149446)
Sample type genomic
 
Source name NA10855 Cell Line
Organism Homo sapiens
Characteristics Cell line derived germline DNA from human diversity panel
Growth protocol Cells were grown in in RPMI 1640 supplemented with 10% heat-inactivated FBS
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from cultured cells by overnight digestion, phenol-chloroform extraction and ethanol precipitation.
Label biotin
Label protocol 250 ng Genomic DNA was biotinylated as described by manufacturer (Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix).
 
Hybridization protocol Hybridizations were performed according to the standard manufacturer's describe in Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix.
Scan protocol Scanning was done using an Affymetrix 3000 microarray scanner. Specifications can be found in Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix
Description Cell line derived germline DNA from human diversity panel
Data processing Raw Intensity values were calculated using the dChip sofware package.
 
Submission date May 08, 2007
Last update date Oct 31, 2007
Contact name Joel Greshock
Organization name GlaxoSmithKline
Department Translational Medicine, Oncology
Street address 2301 Renaissance Blvd.
City King of Prussia
State/province PA
ZIP/Postal code 19406
Country USA
 
Platform ID GPL3718
Series (1)
GSE7822 A comparison of DNA copy number profiling platforms using a panel of melanoma cell lines

Data table header descriptions
ID_REF
VALUE Normalized probe intensity

Data table
ID_REF VALUE
SNP_A-1794317 549.542
SNP_A-1786243 568.368
SNP_A-1967971 1568.48
SNP_A-1791488 2485.12
SNP_A-1798049 656.072
SNP_A-2138981 718.932
SNP_A-2308310 1289.93
SNP_A-1976263 2012.21
SNP_A-1784239 1022.25
SNP_A-1898104 930.696
SNP_A-4212440 814.676
SNP_A-2094651 474.772
SNP_A-2107677 2030.12
SNP_A-2071979 2750.14
SNP_A-2029699 1540.86
SNP_A-2260858 751.339
SNP_A-4203142 1020.04
SNP_A-2154361 498.97
SNP_A-2118532 1767.88
SNP_A-1980258 476.593

Total number of rows: 262338

Table truncated, full table size 5606 Kbytes.




Supplementary file Size Download File type/resource
GSM188025.CEL.gz 26.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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