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Series GSE41536 Query DataSets for GSE41536
Status Public on Oct 10, 2013
Title Affymetrix SNP array data for pulmonary adenocarcinomas with or without ALK fusion
Organism Homo sapiens
Experiment type SNP genotyping by SNP array
Genome variation profiling by SNP array
Summary ALK fusion positive tumor constitutes a unique entitiy in lung adenocarcionmas. We compared the allelokaryotypes of ALK fusion positive and negative tumors with SNP array to get insight into the difference of genomic background of them.
Overall design Copy number analysis with Affymetrix 250K SNP arrays of 35 ALK fusion positive and 95 ALK fusion negative lung adenocarcinomas was performed with annonymous references.
Contributor(s) Kato M
Citation(s) 23289484
Submission date Oct 12, 2012
Last update date Feb 12, 2020
Contact name Hironori Ninomiya
Phone +81-3-3540-0111
Fax +81-3-3570-0558
Organization name The Japanese Foundation for Cancer Research
Department pathology
Street address 3-8-31 Ariake, Koutou ward
City Tokyo
ZIP/Postal code 135-8550
Country Japan
Platforms (1)
GPL3718 [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array
Samples (130)
GSM1018645 Lung 62_NMapping250K_Nsp
GSM1018646 Lung 66_NMapping250K_Nsp
GSM1018647 Lung 77_NMapping250K_Nsp
BioProject PRJNA177381

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41536_RAW.tar 4.2 Gb (http)(custom) TAR (of CEL, CHP, TXT)
Processed data included within Sample table
Processed data provided as supplementary file

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