NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM117012 Query DataSets for GSM117012
Status Public on Sep 30, 2006
Title NA18552_Nsp_COMM
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 2
Biomaterial provider Coriell NA18552 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18552
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 29, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotypes
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.007813 18.553 0.071429 0.000000
SNP_A-1780618 BB 0.007813 23.650 0.000000 0.023316
SNP_A-1780632 AB 0.187500 10.901 0.717054 0.536649
SNP_A-1780654 AA 0.007813 32.289 0.988820 0.993947
SNP_A-4192495 BB 0.007813 18.325 0.000000 0.034562
SNP_A-4192498 BB 0.000488 15.506 0.000000 0.000000
SNP_A-1780732 AB 0.031250 5.770 0.544503 0.479246
SNP_A-1780848 BB 0.093750 6.111 0.000000 0.245931
SNP_A-1780985 BB 0.007813 15.298 0.000000 0.000000
SNP_A-1781022 AB 0.023438 4.258 0.510112 0.630952
SNP_A-1781076 AB 0.023438 11.553 0.596296 0.442559
SNP_A-1781249 AA 0.007813 6.161 1.000000 0.879198
SNP_A-1781276 AA 0.023438 12.767 0.922182 1.000000
SNP_A-1781302 BB 0.132813 6.651 0.253918 0.018543
SNP_A-1781510 AA 0.023438 29.384 0.925486 1.000000
SNP_A-4192564 BB 0.007813 13.534 0.040164 0.000000
SNP_A-1781614 AB 0.023438 4.275 0.620370 0.695195
SNP_A-1781633 BB 0.039063 12.001 0.140825 0.000000
SNP_A-1781764 BB 0.007813 9.409 0.128261 0.100733
SNP_A-1781829 AA 0.093750 9.507 0.933180 0.857143

Total number of rows: 262264

Table truncated, full table size 12972 Kbytes.




Supplementary file Size Download File type/resource
GSM117012.CEL.gz 40.7 Mb (ftp)(http) CEL
GSM117012.raw.txt.gz 24.0 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap