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Sample GSM117014 Query DataSets for GSM117014
Status Public on Sep 30, 2006
Title NA18558_Nsp_COMM
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Male Cell lot number: 2
Biomaterial provider Coriell NA18558 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18558
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 29, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotypes
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.007813 13.554 0.159611 0.004469
SNP_A-1780618 AB 0.023438 10.035 0.426142 0.363492
SNP_A-1780632 AA 0.007813 18.135 1.000000 0.966434
SNP_A-1780654 AA 0.007813 34.300 1.000000 1.000000
SNP_A-4192495 AB 0.023438 9.125 0.473148 0.410602
SNP_A-4192498 AA 0.072754 5.627 0.847242 0.866617
SNP_A-1780732 BB 0.015625 17.365 0.000000 0.000000
SNP_A-1780848 AB 0.007813 16.122 0.597196 0.613793
SNP_A-1780985 AB 0.062500 5.165 0.430246 0.556516
SNP_A-1781022 AA 0.007813 12.272 1.000000 1.000000
SNP_A-1781076 AB 0.023438 12.184 0.609739 0.555738
SNP_A-1781249 AA 0.007813 12.998 1.000000 0.916879
SNP_A-1781276 AA 0.023438 11.386 0.926305 1.000000
SNP_A-1781302 AB 0.007813 14.408 0.425725 0.588542
SNP_A-1781510 AA 0.007813 24.799 0.925556 1.000000
SNP_A-4192564 BB 0.007813 14.205 0.020014 0.000000
SNP_A-1781614 AA 0.007813 26.841 0.989515 0.892966
SNP_A-1781633 AB 0.007813 12.959 0.455181 0.441525
SNP_A-1781764 AA 0.007813 9.877 0.992173 0.847889
SNP_A-1781829 AA 0.007813 6.862 0.930479 0.895878

Total number of rows: 262264

Table truncated, full table size 12975 Kbytes.




Supplementary file Size Download File type/resource
GSM117014.CEL.gz 43.7 Mb (ftp)(http) CEL
GSM117014.raw.txt.gz 26.5 Mb (ftp)(http) TXT

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