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Sample GSM188033 Query DataSets for GSM188033
Status Public on Nov 02, 2007
Title Cell line derived germline DNA from human diversity panel (AFFY500KNSPSC149454)
Sample type genomic
 
Source name NA12707 Cell Line
Organism Homo sapiens
Characteristics Cell line derived germline DNA from human diversity panel
Growth protocol Cells were grown in in RPMI 1640 supplemented with 10% heat-inactivated FBS
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from cultured cells by overnight digestion, phenol-chloroform extraction and ethanol precipitation.
Label biotin
Label protocol 250 ng Genomic DNA was biotinylated as described by manufacturer (Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix).
 
Hybridization protocol Hybridizations were performed according to the standard manufacturer's describe in Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix.
Scan protocol Scanning was done using an Affymetrix 3000 microarray scanner. Specifications can be found in Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix
Description Cell line derived germline DNA from human diversity panel
Data processing Raw Intensity values were calculated using the dChip sofware package.
 
Submission date May 08, 2007
Last update date Oct 31, 2007
Contact name Joel Greshock
Organization name GlaxoSmithKline
Department Translational Medicine, Oncology
Street address 2301 Renaissance Blvd.
City King of Prussia
State/province PA
ZIP/Postal code 19406
Country USA
 
Platform ID GPL3718
Series (1)
GSE7822 A comparison of DNA copy number profiling platforms using a panel of melanoma cell lines

Data table header descriptions
ID_REF
VALUE Normalized probe intensity

Data table
ID_REF VALUE
SNP_A-1794317 588.168
SNP_A-1786243 471.116
SNP_A-1967971 1676.57
SNP_A-1791488 2113.74
SNP_A-1798049 868.802
SNP_A-2138981 713.061
SNP_A-2308310 1168.51
SNP_A-1976263 1855.33
SNP_A-1784239 1124.53
SNP_A-1898104 899.596
SNP_A-4212440 801.586
SNP_A-2094651 720.778
SNP_A-2107677 1998.86
SNP_A-2071979 2520.29
SNP_A-2029699 1830.45
SNP_A-2260858 767.389
SNP_A-4203142 926.234
SNP_A-2154361 428.134
SNP_A-2118532 1916.21
SNP_A-1980258 458.727

Total number of rows: 262338

Table truncated, full table size 5606 Kbytes.




Supplementary file Size Download File type/resource
GSM188033.CEL.gz 25.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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