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Sample GSM188035 Query DataSets for GSM188035
Status Public on Nov 02, 2007
Title Cell line derived germline DNA from human diversity panel (AFFY500KNSPSC149456)
Sample type genomic
 
Source name NA12717 Cell Line
Organism Homo sapiens
Characteristics Cell line derived germline DNA from human diversity panel
Growth protocol Cells were grown in in RPMI 1640 supplemented with 10% heat-inactivated FBS
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from cultured cells by overnight digestion, phenol-chloroform extraction and ethanol precipitation.
Label biotin
Label protocol 250 ng Genomic DNA was biotinylated as described by manufacturer (Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix).
 
Hybridization protocol Hybridizations were performed according to the standard manufacturer's describe in Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix.
Scan protocol Scanning was done using an Affymetrix 3000 microarray scanner. Specifications can be found in Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix
Description Cell line derived germline DNA from human diversity panel
Data processing Raw Intensity values were calculated using the dChip sofware package.
 
Submission date May 08, 2007
Last update date Oct 31, 2007
Contact name Joel Greshock
Organization name GlaxoSmithKline
Department Translational Medicine, Oncology
Street address 2301 Renaissance Blvd.
City King of Prussia
State/province PA
ZIP/Postal code 19406
Country USA
 
Platform ID GPL3718
Series (1)
GSE7822 A comparison of DNA copy number profiling platforms using a panel of melanoma cell lines

Data table header descriptions
ID_REF
VALUE Normalized probe intensity

Data table
ID_REF VALUE
SNP_A-1794317 546.643
SNP_A-1786243 467.885
SNP_A-1967971 1683.92
SNP_A-1791488 1639.73
SNP_A-1798049 903.117
SNP_A-2138981 730.793
SNP_A-2308310 1311.92
SNP_A-1976263 2264.6
SNP_A-1784239 1013.36
SNP_A-1898104 757.184
SNP_A-4212440 683.06
SNP_A-2094651 726.519
SNP_A-2107677 2410.58
SNP_A-2071979 2442.23
SNP_A-2029699 2142.36
SNP_A-2260858 714.662
SNP_A-4203142 1248.95
SNP_A-2154361 366.822
SNP_A-2118532 1842.04
SNP_A-1980258 613.428

Total number of rows: 262338

Table truncated, full table size 5606 Kbytes.




Supplementary file Size Download File type/resource
GSM188035.CEL.gz 25.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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