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Sample GSM117005 Query DataSets for GSM117005
Status Public on Sep 30, 2006
Title NA18532_Nsp_COMM
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 1
Biomaterial provider Coriell NA18532 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18532
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 29, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotypes
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.062500 14.630 0.042883 0.000000
SNP_A-1780618 AA 0.007813 5.077 0.876497 0.869685
SNP_A-1780632 AA 0.007813 27.344 1.000000 0.977273
SNP_A-1780654 AA 0.007813 28.452 0.999757 0.975845
SNP_A-4192495 BB 0.007813 13.096 0.000000 0.041269
SNP_A-4192498 BB 0.000488 18.313 0.000000 0.000000
SNP_A-1780732 AB 0.015625 9.850 0.518875 0.401242
SNP_A-1780848 BB 0.062500 8.192 0.000000 0.192788
SNP_A-1780985 AA 0.007813 20.193 1.000000 0.978188
SNP_A-1781022 BB 0.007813 12.683 0.000000 0.078241
SNP_A-1781076 AB 0.007813 10.912 0.553633 0.593369
SNP_A-1781249 AA 0.007813 7.444 0.822581 0.928268
SNP_A-1781276 AA 0.015625 14.895 0.991327 0.975301
SNP_A-1781302 AB 0.007813 17.504 0.583130 0.509104
SNP_A-1781510 AA 0.007813 32.325 0.993094 1.000000
SNP_A-4192564 BB 0.039063 17.171 0.000000 0.002946
SNP_A-1781614 AB 0.039063 6.817 0.703655 0.564457
SNP_A-1781633 AA 0.007813 21.790 0.992366 1.000000
SNP_A-1781764 AA 0.023438 20.217 1.000000 0.908497
SNP_A-1781829 AA 0.007813 16.141 0.962513 0.882052

Total number of rows: 262264

Table truncated, full table size 12990 Kbytes.




Supplementary file Size Download File type/resource
GSM117005.CEL.gz 43.3 Mb (ftp)(http) CEL
GSM117005.raw.txt.gz 26.2 Mb (ftp)(http) TXT

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