NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM117109 Query DataSets for GSM117109
Status Public on Sep 30, 2006
Title NA18978_Nsp_COMM
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 1
Biomaterial provider Coriell NA18978 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18978
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 29, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotypes
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.039063 10.596 0.139920 0.000000
SNP_A-1780618 AB 0.015625 5.849 0.376398 0.465617
SNP_A-1780632 AA 0.007813 19.354 1.000000 1.000000
SNP_A-1780654 AA 0.007813 24.220 0.975722 1.000000
SNP_A-4192495 BB 0.007813 17.405 0.000000 0.000000
SNP_A-4192498 AB 0.366211 -1.608 0.148026 0.478706
SNP_A-1780732 AA 0.015625 10.634 0.980817 0.987299
SNP_A-1780848 AB 0.007813 11.839 0.564170 0.653369
SNP_A-1780985 AB 0.312500 1.224 0.424547 0.413603
SNP_A-1781022 AB 0.125000 0.530 0.630695 0.745536
SNP_A-1781076 BB 0.062500 11.917 0.386682 0.000000
SNP_A-1781249 AA 0.062500 2.016 0.735732 0.791994
SNP_A-1781276 AA 0.023438 11.580 0.864008 0.889768
SNP_A-1781302 BB 0.023438 7.778 0.162829 0.082224
SNP_A-1781510 AB 0.062500 8.620 0.653262 0.792863
SNP_A-4192564 BB 0.007813 10.479 0.030933 0.204167
SNP_A-1781614 AB 0.007813 9.421 0.623211 0.560591
SNP_A-1781633 BB 0.007813 7.851 0.139572 0.033278
SNP_A-1781764 AA 0.007813 9.716 0.927373 0.844415
SNP_A-1781829 AA 0.007813 7.743 0.917225 0.844297

Total number of rows: 262264

Table truncated, full table size 12949 Kbytes.




Supplementary file Size Download File type/resource
GSM117109.CEL.gz 43.5 Mb (ftp)(http) CEL
GSM117109.raw.txt.gz 26.4 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap