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Series GSE25893 Query DataSets for GSE25893
Status Public on Jun 30, 2011
Title A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Genome variation profiling by genome tiling array
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Six HapMap samples and 13 genotyping array platform: comparison of multiple platforms, run at multiple sites, analysed with multiple algorithms to assess and compare the performance of each
 
Citation(s) 21552272
Submission date Dec 07, 2010
Last update date Jan 17, 2019
Contact name Stephen W Scherer
E-mail(s) stephen.scherer@sickkids.ca
Organization name The Hospital for Sick Children
Department Genetics and Genomic Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
 
Platforms (14)
GPL3718 [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array
GPL4091 Agilent-014693 Human Genome CGH Microarray 244A (Feature number version)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (385)
GSM694382 NA18576 rep1 at HMS (Human1Mv1_C)
GSM694383 NA18576 rep2 at HMS (Human1Mv1_C)
GSM694384 NA18576 rep3 at HMS (Human1Mv1_C)
This SuperSeries is composed of the following SubSeries:
GSE28092 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Human1Mv1_C)
GSE28101 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (HumanOmni2.5-Quad)
GSE28102 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Illumina_650Y)
Relations
BioProject PRJNA135881

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE25893_RAW.tar 18.6 Gb (http)(custom) TAR (of CEL, CHP, CNCHP, PAIR, TIFF, TXT)

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