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Sample GSM117111 Query DataSets for GSM117111
Status Public on Sep 30, 2006
Title NA18980_Nsp_COMM
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 2
Biomaterial provider Coriell NA18980 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18980
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 29, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotypes
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.023438 18.643 0.076602 0.000000
SNP_A-1780618 AB 0.046875 3.567 0.341538 0.305709
SNP_A-1780632 AA 0.007813 13.460 1.000000 0.967864
SNP_A-1780654 AA 0.007813 31.922 1.000000 0.973389
SNP_A-4192495 AB 0.187500 5.702 0.262295 0.462320
SNP_A-4192498 AB 0.266602 -1.727 0.188889 0.486405
SNP_A-1780732 BB 0.015625 17.456 0.000000 0.001466
SNP_A-1780848 AB 0.007813 10.784 0.556276 0.613687
SNP_A-1780985 AA 0.007813 17.510 0.996875 0.966797
SNP_A-1781022 AA 0.023438 8.533 0.937587 1.000000
SNP_A-1781076 BB 0.023438 17.361 0.141148 0.000000
SNP_A-1781249 AA 0.007813 12.284 0.975669 0.926573
SNP_A-1781276 AB 0.023438 5.998 0.576890 0.627336
SNP_A-1781302 AB 0.023438 14.235 0.625287 0.495710
SNP_A-1781510 AB 0.382813 2.618 0.716403 0.829287
SNP_A-4192564 BB 0.046875 4.540 0.092246 0.107940
SNP_A-1781614 AB 0.007813 12.338 0.673437 0.505848
SNP_A-1781633 BB 0.007813 4.178 0.123100 0.121212
SNP_A-1781764 AB 0.007813 14.241 0.530486 0.505287
SNP_A-1781829 AA 0.007813 7.736 0.935697 0.838966

Total number of rows: 262264

Table truncated, full table size 12950 Kbytes.




Supplementary file Size Download File type/resource
GSM117111.CEL.gz 42.1 Mb (ftp)(http) CEL
GSM117111.raw.txt.gz 25.2 Mb (ftp)(http) TXT

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