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Sample GSM233430 Query DataSets for GSM233430
Status Public on Dec 20, 2007
Title MM0278-001_NspI
Sample type genomic
 
Source name lymphoblast or blood
Organism Homo sapiens
Characteristics Family ID: MM0278-001
DNA ID: 57786
Gender: F
Family Type: SPX
Individual Type: parents
Treatment protocol Not Applicable
Growth protocol Not Applicable
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from blood or lymphoblast using a standard phenol/chloroform method. 500ng of genomic DNA was used for subsequent PCR complexity reduction (GeneChip® Mapping 500K Assay Manual, 2005, Affymetrix)
Label biotin
Label protocol Biotinylated genomic DNA were prepared according to the standard Affymetrix protocol from 90 ug PCR product (GeneChip® Mapping 500K Assay Manual, 2005, Affymetrix).
 
Hybridization protocol Following fragmentation, 90 ug of genomic DNA were hybridized for 16 hr at 49C on either the GeneChip® Mapping NspI or StyI chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol Arrays were scanned using the GeneChip Scanner 3000 7G.
Description SNP data from trio simplex family
Data processing The data were processed using GCOS software. Genotypes were analyzed with GTYPE using Affymetrix defaults.
 
Submission date Oct 03, 2007
Last update date Aug 14, 2011
Contact name Christian R. Marshall
URL http://www.tcag.ca/
Organization name The Hospital for Sick Children
Department Genetics & Genome Biology
Street address 101 College St.
City Toronto
State/province ON
ZIP/Postal code M5G 1L7
Country Canada
 
Platform ID GPL3718
Series (1)
GSE9222 Structural Variation of Chromosomes in Autism Spectrum Disorder.

Data table header descriptions
ID_REF
VALUE Genotypes: AA, AB, BB, No Call
CONFIDENCE
RAS1 Relative allele signal for the data in the first probe group
RAS2 Relative allele signal for the data in the second probe group
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL

Data table
ID_REF VALUE CONFIDENCE RAS1 RAS2 P-VALUE AA P-VALUE AB P-VALUE BB P-VALUE NO CALL
AFFX-5Q-123 No Call 0 0 0 0 0 0 0
AFFX-5Q-456 No Call 0 0 0 0 0 0 0
AFFX-5Q-789 No Call 0 0 0 0 0 0 0
AFFX-5Q-ABC No Call 0 0 0 0 0 0 0
AFFX-barcodeA No Call 0 0 0 0 0 0 0
AFFX-barcodeB No Call 0 0 0 0 0 0 0
AFFX-barcodeC No Call 0 0 0 0 0 0 0
AFFX-barcodeD No Call 0 0 0 0 0 0 0
AFFX-barcodeE No Call 0 0 0 0 0 0 0
AFFX-barcodeF No Call 0 0 0 0 0 0 0
AFFX-barcodeG No Call 0 0 0 0 0 0 0
AFFX-barcodeH No Call 0 0 0 0 0 0 0
AFFX-barcodeI No Call 0 0 0 0 0 0 0
AFFX-barcodeJ No Call 0 0 0 0 0 0 0
AFFX-barcodeK No Call 0 0 0 0 0 0 0
AFFX-barcodeL No Call 0 0 0 0 0 0 0
AFFX-barcodeM No Call 0 0 0 0 0 0 0
AFFX-barcodeN No Call 0 0 0 0 0 0 0
AFFX-barcodeO No Call 0 0 0 0 0 0 0
AFFX-barcodeP No Call 0 0 0 0 0 0 0

Total number of rows: 262338

Table truncated, full table size 20661 Kbytes.




Supplementary file Size Download File type/resource
GSM233430.CEL.gz 28.2 Mb (ftp)(http) CEL
GSM233430.CHP.gz 475.1 Kb (ftp)(http) CHP
Processed data included within Sample table

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