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Sample GSM116945 Query DataSets for GSM116945
Status Public on Sep 30, 2006
Title NA12234_Nsp_COMM
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 2
Biomaterial provider Coriell NA12234 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12234
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 29, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotypes
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.007813 24.352 0.000000 0.000000
SNP_A-1780618 AA 0.007813 9.698 0.897833 0.923117
SNP_A-1780632 BB 0.007813 11.887 0.007843 0.000000
SNP_A-1780654 AA 0.007813 30.388 0.994782 1.000000
SNP_A-4192495 AB 0.007813 8.575 0.449109 0.418971
SNP_A-4192498 BB 0.000488 13.592 0.000000 0.000000
SNP_A-1780732 AB 0.015625 12.561 0.485733 0.557682
SNP_A-1780848 BB 0.062500 6.843 0.000000 0.220486
SNP_A-1780985 BB 0.007813 13.057 0.000000 0.000000
SNP_A-1781022 AA 0.007813 16.793 0.900668 1.000000
SNP_A-1781076 BB 0.062500 13.121 0.216398 0.023320
SNP_A-1781249 AA 0.007813 11.870 1.000000 0.910101
SNP_A-1781276 AB 0.007813 8.352 0.543630 0.530996
SNP_A-1781302 BB 0.023438 12.352 0.039835 0.014497
SNP_A-1781510 AA 0.007813 18.162 0.942066 1.000000
SNP_A-4192564 BB 0.007813 14.216 0.057679 0.000000
SNP_A-1781614 AA 0.007813 17.782 1.000000 0.935233
SNP_A-1781633 AA 0.007813 18.104 0.967623 1.000000
SNP_A-1781764 BB 0.007813 19.644 0.032062 0.000000
SNP_A-1781829 AA 0.039063 6.988 0.911693 0.845954

Total number of rows: 262264

Table truncated, full table size 12983 Kbytes.




Supplementary file Size Download File type/resource
GSM116945.CEL.gz 43.5 Mb (ftp)(http) CEL
GSM116945.raw.txt.gz 26.4 Mb (ftp)(http) TXT

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