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Sample GSM117547 Query DataSets for GSM117547
Status Public on Sep 30, 2006
Title NA18956_Nsp_COMM
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 1
Biomaterial provider Coriell NA18956 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18956
Extracted molecule genomic DNA
Label Biotin
 
Description Hapmap samples used for identifying variable copy number regions in the genome
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Jun 30, 2006
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3718
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotypes
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1780520 BB 0.039063 11.228 0.131068 0.035112
SNP_A-1780618 AB 0.007813 8.906 0.515714 0.352792
SNP_A-1780632 AA 0.007813 11.658 0.947581 0.913835
SNP_A-1780654 AA 0.007813 17.346 0.989632 0.962865
SNP_A-4192495 AB 0.250000 3.120 0.141026 0.431784
SNP_A-4192498 BB 0.000977 16.740 0.000000 0.000000
SNP_A-1780732 AB 0.015625 3.969 0.602041 0.585193
SNP_A-1780848 BB 0.132813 6.647 0.000000 0.237288
SNP_A-1780985 BB 0.007813 9.816 0.000000 0.000000
SNP_A-1781022 AA 0.007813 6.532 1.000000 1.000000
SNP_A-1781076 AB 0.023438 8.504 0.656051 0.580508
SNP_A-1781249 AA 0.007813 6.210 1.000000 0.819836
SNP_A-1781276 AB 0.039063 9.619 0.480565 0.543860
SNP_A-1781302 BB 0.007813 11.979 0.133663 0.013575
SNP_A-1781510 AA 0.007813 23.587 0.946232 1.000000
SNP_A-4192564 BB 0.093750 4.436 0.130499 0.114130
SNP_A-1781614 AB 0.007813 9.443 0.613122 0.565502
SNP_A-1781633 AB 0.007813 10.373 0.530810 0.397368
SNP_A-1781764 AA 0.062500 7.069 0.949673 0.754821
SNP_A-1781829 AA 0.062500 5.115 0.948620 0.793767

Total number of rows: 262264

Table truncated, full table size 12943 Kbytes.




Supplementary file Size Download File type/resource
GSM117547.CEL.gz 40.2 Mb (ftp)(http) CEL
GSM117547.raw.txt.gz 23.7 Mb (ftp)(http) TXT

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