GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE16619 Query DataSets for GSE16619
Status Public on Sep 16, 2009
Title Identification of novel gene amplification events in breast cancer
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary To identify novel gene amplification events that may contribute to breast cancer progression, we examined copy number variation
in 161 primary breast cancer samples using the Affymetrix 250K_Nsp and 250K_Sty microarrays or the Affymetrix SNP5.0 microarray.
Overall design Affymetrix SNP arrays were performed according to the manufacturer's directions on DNA extracted from primary breast cancer samples.
Copy number variations were determined from probeset signal intensities.
Contributor(s) Lee MP, Lalage W, Clifford RJ
Citation(s) 19706770
Submission date Jun 15, 2009
Last update date May 17, 2017
Contact name Robert J Clifford
Phone 301-435-1527
Fax 301-480-6641
Organization name NCI
Department CCR
Street address 2115 E Jefferson
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
Platforms (3)
GPL3718 [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array
GPL3720 [Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array
GPL6804 [GenomeWideSNP_5] Affymetrix Genome-Wide Human SNP 5.0 Array
Samples (203)
GSM417087 breast cancer sample from patient BC1_Nsp
GSM417088 breast cancer sample from patient BC2_Nsp
GSM417089 breast cancer sample from patient BC3_Nsp
BioProject PRJNA116261

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16619_RAW.tar 5.9 Gb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap