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Status
Public on Jul 18, 2002
Title
[Celegans] Affymetrix C. elegans Genome Array
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Caenorhabditis elegans
Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 22625 entries and was indexed 30-Apr-2002. Sequence information used for the design of the C. elegans array was downloaded from the Sanger Center database on December 05, 2000 and from GenBank release 121. All sequences were functionally reannotated by Affymetrix for improved descriptions. Annotation data from Wormbase, Gene Ontology Consortium and Interpro were mapped to the C. elegans Genome Array probe sets. Annotations derived from Affymetrix CSV file dated 5/19/2004 Keywords = high density oligonucleotide array July 06, 2016: annotation table updated with netaffx build 35
Web link
http://www.affymetrix.com/support/technical/byproduct.affx?product=celegans http://www.affymetrix.com/analysis/index.affx
Submission date
Jul 02, 2002
Last update date
Mar 30, 2022
Organization
Affymetrix, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx
Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (2426)
GSM28389 , GSM28390 , GSM28391 , GSM28392 , GSM28393 , GSM28394
GSM28395 ,
GSM28396 ,
GSM28397 ,
GSM28398 ,
GSM28399 ,
GSM28400 ,
GSM28401 ,
GSM28402 ,
GSM28403 ,
GSM28404 ,
GSM28405 ,
GSM28406 ,
GSM28407 ,
GSM28408 ,
GSM39425 ,
GSM39426 ,
GSM39427 ,
GSM39428 ,
GSM39429 ,
GSM39430 ,
GSM39431 ,
GSM39432 ,
GSM39433 ,
GSM39434 ,
GSM39435 ,
GSM39436 ,
GSM39437 ,
GSM39438 ,
GSM39439 ,
GSM39440 ,
GSM39441 ,
GSM39442 ,
GSM39443 ,
GSM39444 ,
GSM39445 ,
GSM39446 ,
GSM39447 ,
GSM39448 ,
GSM39449 ,
GSM39450 ,
GSM39451 ,
GSM39452 ,
GSM39453 ,
GSM39454 ,
GSM39455 ,
GSM39456 ,
GSM39457 ,
GSM39458 ,
GSM39459 ,
GSM39460 ,
GSM39461 ,
GSM39462 ,
GSM39463 ,
GSM39464 ,
GSM39465 ,
GSM39466 ,
GSM39467 ,
GSM39468 ,
GSM39469 ,
GSM39470 ,
GSM39471 ,
GSM39472 ,
GSM39473 ,
GSM39474 ,
GSM39475 ,
GSM39476 ,
GSM39477 ,
GSM39478 ,
GSM39479 ,
GSM39480 ,
GSM39481 ,
GSM39482 ,
GSM39483 ,
GSM39484 ,
GSM39485 ,
GSM39486 ,
GSM39487 ,
GSM39488 ,
GSM39489 ,
GSM39490 ,
GSM39491 ,
GSM39492 ,
GSM39493 ,
GSM39494 ,
GSM39495 ,
GSM39496 ,
GSM39497 ,
GSM39498 ,
GSM39499 ,
GSM39500 ,
GSM39501 ,
GSM39502 ,
GSM39503 ,
GSM39504 ,
GSM39505 ,
GSM39506 ,
GSM39507 ,
GSM39508 ,
GSM39509 ,
GSM39510 ,
GSM39511 ,
GSM39512 ,
GSM39513 ,
GSM39514 ,
GSM39515 ,
GSM39516 ,
GSM39517 ,
GSM39518 ,
GSM39519 ,
GSM39520 ,
GSM39521 ,
GSM39522 ,
GSM39523 ,
GSM39524 ,
GSM39525 ,
GSM39526 ,
GSM39527 ,
GSM39528 ,
GSM39529 ,
GSM39530 ,
GSM39531 ,
GSM39532 ,
GSM39533 ,
GSM39534 ,
GSM39535 ,
GSM39536 ,
GSM39537 ,
GSM39538 ,
GSM39539 ,
GSM39540 ,
GSM39541 ,
GSM39542 ,
GSM39543 ,
GSM39544 ,
GSM39545 ,
GSM39546 ,
GSM39547 ,
GSM40306 ,
GSM40307 ,
GSM40308 ,
GSM40309 ,
GSM40310 ,
GSM40311 ,
GSM40312 ,
GSM40313 ,
GSM40314 ,
GSM62934 ,
GSM62935 ,
GSM62936 ,
GSM62937 ,
GSM62938 ,
GSM62939 ,
GSM62940 ,
GSM62941 ,
GSM62942 ,
GSM62943 ,
GSM62944 ,
GSM62945 ,
GSM106344 ,
GSM106345 ,
GSM106346 ,
GSM106347 ,
GSM106348 ,
GSM106349 ,
GSM106350 ,
GSM106351 ,
GSM135322 ,
GSM135323 ,
GSM135324 ,
GSM135325 ,
GSM135326 ,
GSM135327 ,
GSM135328 ,
GSM135329 ,
GSM135330 ,
GSM135340 ,
GSM135355 ,
GSM135365 ,
GSM135382 ,
GSM135383 ,
GSM135384 ,
GSM135385 ,
GSM135386 ,
GSM135387 ,
GSM135395 ,
GSM135467 ,
GSM135468 ,
GSM135469 ,
GSM135476 ,
GSM135477 ,
GSM135478 ,
GSM135479 ,
GSM135480 ,
GSM146422 ,
GSM146423 ,
GSM147330 ,
GSM147331 ,
GSM147332 ,
GSM147333 ,
GSM147334 ,
GSM147335 ,
GSM147336 ,
GSM147337 ,
GSM147338 ,
GSM147339 ,
GSM147340 ,
GSM147341 ,
GSM147342 ,
GSM147344 ,
GSM147345 ,
GSM147346 ,
GSM151745 ,
GSM151746 ,
GSM151747 ,
GSM151748 ,
GSM177131 ,
GSM177132 ,
GSM197716 ,
GSM197717 ,
GSM197718 ,
GSM197719 ,
GSM197720 ,
GSM197721 ,
GSM197722 ,
GSM197723 ,
GSM197724 ,
GSM197725 ,
GSM197726 ,
GSM197727 ,
GSM197728 ,
GSM197729 ,
GSM197730 ,
GSM197731 ,
GSM197732 ,
GSM197733 ,
GSM197734 ,
GSM197735 ,
GSM197736 ,
GSM197737 ,
GSM197738 ,
GSM197739 ,
GSM201989 ,
GSM201990 ,
GSM201991 ,
GSM201992 ,
GSM201993 ,
GSM201994 ,
GSM201995 ,
GSM203610 ,
GSM203611 ,
GSM203612 ,
GSM203613 ,
GSM203614 ,
GSM203615 ,
GSM203616 ,
GSM203617 ,
GSM203618 ,
GSM203619 ,
GSM203620 ,
GSM203621 ,
GSM210107 ,
GSM210108 ,
GSM210109 ,
GSM210110 ,
GSM210111 ,
GSM210112 ,
GSM210113 ,
GSM210114 ,
GSM210115 ,
GSM210116 ,
GSM210117 ,
GSM210118 ,
GSM210119 ,
GSM214716 ,
GSM214725 ,
GSM214727 ,
GSM214728 ,
GSM214729 ,
GSM214730 ,
GSM214731 ,
GSM214732 ,
GSM214733 ,
GSM215547 ,
GSM215548 ,
GSM215549 ,
GSM215550 ,
GSM215551 ,
GSM215552 ,
GSM215553 ,
GSM215554 ,
GSM215555 ,
GSM234788 ,
GSM234790 ,
GSM234791 ,
GSM236987 ,
GSM236988 ,
GSM237000 ,
GSM237005 ,
GSM237006 ,
GSM237007 ,
GSM237008 ,
GSM237009 ,
GSM237010 ,
GSM237011 ,
GSM237012 ,
GSM240705 ,
GSM240706 ,
GSM240707 ,
GSM240708 ,
GSM240709 ,
GSM240710 ,
GSM240711 ,
GSM240712 ,
GSM243909 ,
GSM243910 ,
GSM244167 ,
GSM244169 ,
GSM244173 ,
GSM244176 ,
GSM244177 ,
GSM244180 ,
GSM244181 ,
GSM244182 ,
GSM244183 ,
GSM244184 ,
GSM244186 ,
GSM244187 ,
GSM244189 ,
GSM244190 ,
GSM244192 ,
GSM244193 ,
GSM244195 ,
GSM244196 ,
GSM244198 ,
GSM244199 ,
GSM244200 ,
GSM244201 ,
GSM244202 ,
GSM244203 ,
GSM244204 ,
GSM244205 ,
GSM244206 ,
GSM244207 ,
GSM244208 ,
GSM244209 ,
GSM244210 ,
GSM244211 ,
GSM244212 ,
GSM244213 ,
GSM244214 ,
GSM244215 ,
GSM244216 ,
GSM244217 ,
GSM244218 ,
GSM244219 ,
GSM244221 ,
GSM244222 ,
GSM244223 ,
GSM244225 ,
GSM244226 ,
GSM244227 ,
GSM244229 ,
GSM244230 ,
GSM244231 ,
GSM244233 ,
GSM244234 ,
GSM244236 ,
GSM244238 ,
GSM244245 ,
GSM244247 ,
GSM244250 ,
GSM244252 ,
GSM244255 ,
GSM244257 ,
GSM244258 ,
GSM244260 ,
GSM244261 ,
GSM244262 ,
GSM244264 ,
GSM244265 ,
GSM244266 ,
GSM244267 ,
GSM244268 ,
GSM244269 ,
GSM244270 ,
GSM244271 ,
GSM244272 ,
GSM250111 ,
GSM250112 ,
GSM250113 ,
GSM250114 ,
GSM250115 ,
GSM250116 ,
GSM250117 ,
GSM250118 ,
GSM250119 ,
GSM250120 ,
GSM251550 ,
GSM251551 ,
GSM251552 ,
GSM251553 ,
GSM251554 ,
GSM251555 ,
GSM251556 ,
GSM251557 ,
GSM251558 ,
GSM251559 ,
GSM272398 ,
GSM272399 ,
GSM272400 ,
GSM272401 ,
GSM272402 ,
GSM272403 ,
GSM272404 ,
GSM272405 ,
GSM272406 ,
GSM272407 ,
GSM279203 ,
GSM279204 ,
GSM279205 ,
GSM279206 ,
GSM279207 ,
GSM279208 ,
GSM279209 ,
GSM279210 ,
GSM279211 ,
GSM279212 ,
GSM279213 ,
GSM279214 ,
GSM279215 ,
GSM279216 ,
GSM279217 ,
GSM279218 ,
GSM279219 ,
GSM279220 ,
GSM309200 ,
GSM309201 ,
GSM309202 ,
GSM309203 ,
GSM309204 ,
GSM309205 ,
GSM309206 ,
GSM309207 ,
GSM309208 ,
GSM309209 ,
GSM309210 ,
GSM309211 ,
GSM309212 ,
GSM309213 ,
GSM309214 ,
GSM309215 ,
GSM309216 ,
GSM309217 ,
GSM309218 ,
GSM309219 ,
GSM309220 ,
GSM309221 ,
GSM309222 ,
GSM309223 ,
GSM309224 ,
GSM309225 ,
GSM309226 ,
GSM309227 ,
GSM309228 ,
GSM309229 ,
GSM309230 ,
GSM309231 ,
GSM309232 ,
GSM309233 ,
GSM309234 ,
GSM309235 ,
GSM311471 ,
GSM311472 ,
GSM311473 ,
GSM311474 ,
GSM311475 ,
GSM311476 ,
GSM311477 ,
GSM311478 ,
GSM311479 ,
GSM311480 ,
GSM311481 ,
GSM311482 ,
GSM311483 ,
GSM311484 ,
GSM311485 ,
GSM311486 ,
GSM311487 ,
GSM311488 ,
GSM311489 ,
GSM311490 ,
GSM311491 ,
GSM311492 ,
GSM311493 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (181)
GSE1762
C. elegans daf2 mutant adults
GSE2180
C. elegans embryonic timecourse in wt and mutant embryos
GSE2210
Microarray-assisted Cloning of Mutants: Expression Profiling of tom-1 and unc-43
GSE2862
Twist Heat Shock in C. elegans
GSE4766
Decline of Nucleotide Excision Repair Capacity in Aged Caenorhabditis elegans
GSE5793
C. elegans gene expression in response to the pathogenic P. aeruginosa strain PA14.
GSE5801
Genes regulated by PMK-1 and DAF-16 in a daf-2(e1368) background.
GSE6547
Developmental transcriptome profiling of the C. elegans pocket protein ortholog, lin-35
GSE6563
Analysis of expression of genes regulated by DAF-19
GSE7354
Regulation of presenilin genes (rogae-affy-c.ele-431660)
GSE8004
Cell-specific microarray profiling of the C. elegans nervous system.
GSE8159
A gene expression fingerprint of C. elegans embryonic motor neurons.
GSE8231
The embryonic muscle transcriptome of C. elegans
GSE8462
The embryonic muscle transcriptome of Caenorhabditis elegans
GSE8659
Whole genome microarray analysis of C. elegans rrf-3 and eri-1 mutants
GSE8696
Heme homeostasis is regulated by the conserved and concerted functions of HRG-1 proteins
GSE9246
Transcriptome profiling of slr-2, C.elegans C2H2 Zn-finger
GSE9301
SKN-1-dependent oxidative stress response in C. elegans
GSE9485
cRNA amplification methods enhance microarray identification of transcripts expressed in the nervous system
GSE9665
Pairing competitive and topologically distinct regulatory modules enhances patterned gene expression
GSE9682
Dietary restriction in Caenorhabditis elegans
GSE9896
Expression data from wildtype and gas-1 mitochondrial mutant C. elegans
GSE9897
Expression data from 2 wildtype and 8 C. elegans ETC mutants
GSE9967
Expression data from wildtype and C. elegan mutants
GSE10787
Low-intensity microwave irradiation does not substantially alter gene expression in late larval and adult C. elegans
GSE11055
Temporal expression analysis of C. elegans larvae hatching in the presence and absence of food.
GSE12298
Caenorhabditis elegans as a Genomic Model for Toxicology
GSE13258
RNA interference and retinoblastoma related genes are required for repression of endogenous siRNA targets in C. elegans
GSE14009
Nutritional control of gene expression during C. elegans L1 arrest and recovery
GSE14640
A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome
GSE14649
DCC binding and function (Expression Analysis)
GSE14932
Ecotoxicity of silver nanoparticles on the soil nematode Caenorhabditis elegans using functional ecotoxicogenomics
GSE15016
Ecotoxicogenomic analysis on the soil nematode Caenorhabditis elegans exposed to BPA, DEHP and NP
GSE15159
Transcriptomic response of young adult N2, xpa1, and glp1 nematodes 3h after exposure to 50 J/m2 UVC radiation at 25°C
GSE15527
Regulation of genes affecting body size and innate immunity by the DBL-1/BMP-like pathway in Caenorhabditis elegans
GSE15762
Comparison of gene expression between wild type (N2) and hlh-30(tm1978) mutant worms
GSE16050
The microRNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans
GSE16405
Transcriptional changes in the absence of nth-1, xpa-1 and nth-1;xpa-1
GSE16753
C. elegans fer-1 mutant gene expression profile
GSE16915
Bio-electrospraying the nematode Caenorhabditis elegans
GSE16975
Hydrogen sulfide (H2S) modulates lifespan of C.elegans
GSE18130
Expression from C. elegans L1 animals
GSE18131
Expression from C. elegans L4 animals
GSE18132
Dynamic O-GlcNAc cycling at promoters of C. elegans genes regulating Longevity, Stress, and Immunity
GSE18157
Gene expression underlying the effects of biotin deficiency in rat liver, worms and yeast
GSE19138
Comprehensive discovery of endogenous Argonaute binding sites in C. elegans
GSE19310
Expression data from wild type C. elegans and 5 osmotic stress resistant mutants exposed to hyper/isotonic environments
GSE19922
RIP-chip analysis of the C. elegans PUF protein FBF
GSE19972
Expression Data from Ectopic expression of SUMO-1 in C. elegans
GSE20053
C. elegans gene expression in response to Y. pestis KIM5 infection
GSE21162
Expression data from the PVD and OLL neurons in C. elegans
GSE21376
Developmental Roles of MEC and NuRD Complexes in Caenorhabditis elegans.
GSE21467
Loss of Caenorhabditis elegans UNG-1 uracil-DNA glycosylase affects apoptosis in response to DNA damaging agents.
GSE21591
RNA immunoprecipitation of GLD-1 followed by microarray analysis of the co-IP'ed mRNAs
GSE21747
Expression data from Caenorhabditis elegans exposed to albendazole
GSE21784
Genome-wide expression analysis during aging in C. elegans
GSE21819
Caenorhabditis elegans infected with Staphylococcus aureus
GSE22660
Expression data from Caenorhabditis elegans exposed to ivermectin
GSE23013
mRNA microarray analysis on young adult Caenorhabditis elegans exposed to benzene, toluene, formaldehyde and a BTF mix
GSE23528
Light/dark- and temperature-regulated transcriptional rhythms in adult Caenorhabditis elegans
GSE23843
RIP-chip analysis of the C. elegans GLD-2 and RNP-8 protein
GSE24847
mRNA microarray analysis on young adult Caenorhabditis elegans exposed to MWCNT
GSE24923
mRNA microarray analysis on young adult Caenorhabditis elegans, Drosophila melanogaster, and Danio rerio exposed to benzene, toluene, and formaldehyde
GSE25513
AMPK and calcineurin induced longevity is mediated by CRTC-1 and CREB
GSE25633
Transcriptional profiling of C. elegans DAF-19 uncovers a ciliary base-associated protein and a CDK/CCRK/LF2p-related kinase required for intraflagellar transport.
GSE25831
Fed L1 larvae total RNA levels by microarray
GSE25834
An MLL/COMPASS subunit functions in the C. elegans dosage compensation complex to target X chromosomes for transcriptional regulation of gene expression
GSE27401
Caenorhabditis elegans infection with Candida albicans
GSE27677
A conserved JNK/AP-1 module is a key mediator of intermittent fasting-induced longevity in C. elegans
GSE27867
Expression data from C. elegans (wild type vs. tag-24)
GSE28494
Germline and embryo gene expression of wild-type vs. mutants in lin-54, a component of the C. elegans DRM complex
GSE28853
Chromosome-biased binding and gene regulation by the C. elegans DRM complex
GSE28856
Expression data of wild-type C. elegans shifted from 23 degrees to 17 degrees
GSE29951
Drivers of metallothionein-mediated detoxification of cadmium in C.elegans
GSE30505
Members of the H3K4 trimethylation complex regulate lifespan in a germline-dependent manner in C. elegans
GSE32031
Expression data in C. elegans L2 larvae after nhr-23 inhibition and in controls
GSE32339
Comparison between Caenorhabditis elegans wild-type and Nep-1 mutant strains
GSE32467
Expression data from wildtype and unc-37 mutant A-class motor neurons in C. elegans
GSE32521
Toxicogenomic responses of C. elegans to gold nanoparticles
GSE32942
Microarray analysis of TAP::ALG-1 associated RNAs isolated from synchronized 'wild-type' animals and 'mir-58' mutants
GSE32944
Identification of miRNA target genes in C. elegans by RIP-chip-SRM
GSE32949
Expression data from C. elegans
GSE34026
Expression data from C. elegans
GSE34113
Expression Profiling of Caenorabditis elegans tdp-1 loss-of-function mutant
GSE34471
Heme utilization in the Caenorhabditis elegans hypodermal cells is facilitated by HRG-2
GSE35354
Meta-analysis of global transcriptomics of Quercetin and Tannic acid exposed C. elegans
GSE35360
The complex interplay of genetic pathways in C.elegans following the treatment with humic substances
GSE36358
Expression Data from International C.elegans Experiment 1st
GSE37266
Stimulation of Host Immune Defenses by a Small Molecule Protects C. elegans from Bacterial Infection
GSE37303
Fasting induced changes in gene expression profiles of C. elegans
GSE37305
Age and Fasting in C. elegans
GSE37432
Function, targets and evolution of Caenorhabditis elegans piRNAs (mRNA)
GSE37433
Function, targets and evolution of Caenorhabditis elegans piRNAs
GSE38196
ATFS-1 mediates a protective transcription program during mitochondrial stress
GSE38997
Expression data from Caenorhabditis elegans L1-stage larvae exposed to ethidium bromide and/or serial ultraviolet C radiation
GSE39012
Expression data from L3 stage Caernorhabditis elegans after arsenic exposure
GSE39145
Multiple DNA repair pathways collectively protect against DNA damage-induced replicative aging.
GSE39252
Expression changes in Caenorhabditis elegans xpa-1 mutant
GSE40127
GEI-8, a homologue of vertebrate nuclear receptor corepressor NCoR/SMRT, regulates development and neuronal functions in C. elegans.
GSE40371
Expression from C. elegans L1 animals
GSE41056
Analysis of gene expression changes upon infection of C.elegans with Orsay virus
GSE41058
Competition between viral-derived and endogenous small RNA pathways regulates gene expression in response to viral infection in C.elegans.
GSE41366
Alterations in gene expression in Caenorhabditis elegans associated with organophosphate pesticide intoxication and recovery
GSE41486
Expression data from Caenorhabditis elegans exposed to single-walled carbon nanotubes
GSE42192
Gene expression data from C.elegans
GSE42592
Alterations in gene expression in Caenorhabditis elegans associated with exposure to several classes of toxic industrial chemicals/materials.
GSE42689
mek-1 and mlk-1 in fed or fasted condition
GSE42703
Expression data from C. elegans in the presence or absence of copper sulfate
GSE43952
Integration of Metabolic and Gene Regulatory Networks Modulates The C. elegans Dietary Response
GSE43953
Diet specific expression profiles_MA2
GSE43954
Diet specific expression profiles_MA1
GSE43959
Diet-Induced Developmental Acceleration Independent of TOR and Insulin in C. elegans
GSE44318
Expression data from Caenorhabditis elegans fed with 13L cocoa peptide
GSE45292
In vivo gene expression analysis of C elegans in response to rifampicin
GSE45651
Expression data from the starved first larval stage (L1) C. elegans animals that were incubated in S-basal buffer for 30 hours after bleaching
GSE46288
Expression data from C. elegans during L3 and L3-lethargus
GSE46289
Expression data from C. elegans during L4, L4-lethargus, and Adult
GSE46291
C. elegans during lethargus
GSE47778
DAF-16/FoxO and EGL-27/GATA promote developmental growth in response to persistent somatic DNA damage
GSE48347
C. elegans mixed stage embryo total RNA levels by microarray: L4440 RNAi, smo-1 RNAi and sdc-2 (y93)+RNAi
GSE48499
Transcriptional difference between wild-type and zip-3(gk3164)
GSE50513
Identify genes regulated by zip-2 in absence and presence of P. aeruginosa PA14 infection at 4h
GSE51046
Cholesterol regulates DAF-16 nuclear localization and fasting-induced longevity in C. elegans
GSE51161
DAF-16/FoxO and EGL-27/GATA promote developmental growth in response to persistent somatic DNA damage [N2, xpa-1]
GSE51162
DAF-16/FoxO and EGL-27/GATA promote developmental growth in response to persistent somatic DNA damage [N2, daf-2, daf-16, daf-2;daf-16]
GSE51502
Use of an activated beta-catenin to identify Wnt/beta-catenin pathway target genes in C. elegans, including a subset of collagen genes expressed in late larval development
GSE51691
Expression data from glp-1(e2141) hermaphrodites maintained with or without males for 8 days
GSE52064
DRM complex mutant lin-54 vs. H3K36 methyltransferase mutant mes-4 vs. lin-54; mes-4 double mutant vs. wild type C.elegans germline
GSE52747
Transcriptional response induced by Wnt signaling in Caenorhabditis elegans affects lateral and ventral hypodermal cell development
GSE53732
Conserved nutrient sensor O-GlcNAc transferase is integral to the C. elegans pathogen-specific immune response
GSE54011
C. Elegans expression: toxic vs. adequate vs. low selenium
GSE54024
Expression Data of Reactive Oxygen Species Signalling in C. elegans
GSE54513
mRNAs that co-purify with OMA-1 in the C. elegans germline (microarray)
GSE54518
mRNAs that co-purify with OMA-1 in the C. elegans germline
GSE55422
A Conserved Mitochondrial Surveillance Pathway Is Required for Defense against Pseudomonas aeruginosa
GSE57664
Gene Expression Profiling Reveals Molecular Patterns Underlying the Lifespan-Extending Effect of Tyrosol in Caenorhabditis elegans
GSE63531
Expression data from Caenorhabditis elegans fed with the bacterial strain Bifidobacterium animalis sbsp. lactis CECT 8145
GSE64336
Expression data of worms under different caloric restriction mimetic treatments
GSE64973
Analysis of gene expression between monomethyl branched-chain fatty acid deficient (elo-5) and wild type N2 C. elegans L1 larvae hatched on food-free NGM plates
GSE65417
Expression data from C. elegans wild type, hlh-25 mutant and hlh-29 mutant strains
GSE65851
Beta Amyloid toxicity in a Caenorhabditis elegans model of Alzheimer's disease
GSE68709
Exposure of C. elegans to AOBr-containing surface water samples and to a M. aeruginosa batch culture
GSE70509
Toxicogenomic responses of Caenorhabditis elegans exposed to sulfidized silver nanoparticles
GSE70693
Comparison of gene expression between sams-1(RNAi) and sams-1(RNAi) animals rescued by choline
GSE71482
Expression data from Caenorhabditis elegans fed with a Lactoferrin-based product
GSE71618
Expression data from DD neurons isolated from early L1 stage C. elegans larvae.
GSE72029
C. elegans gene expression in healthy and PA14-infected wild-type and fshr-1 mutant worms
GSE73070
RIP-Chip analysis of the C. elegans FOG-1 and FOG-3 proteins
GSE73101
Expression data from C. elegans wdr-23 mutants
GSE73669
ATFS-1 regulates a broad protective transcriptional program
GSE74459
Translation State Array Assay for C elegans IFE-1-dependent mRNAs
GSE77109
C.elegans gene expression study for single, double or triple genetic perturbations of regulators in AMPK, Insulin and TOR pathway
GSE77110
C.elegans time course study on dietary restriction and aging
GSE77111
A Systems Approach to Reverse Engineer Lifespan Extension by Dietary Restriction
GSE81854
Grape seed extracts-mediated lipid mobility in C. elegans
GSE83722
Lipid biosynthesis coordinates a Mitochondrial to Cytosolic Stress Response
GSE84441
mRNA microarray analysis on young adults C.elegans exposed to UV, TiO2 and UV+TiO2
GSE84489
mRNA microarray analysis on young adults C.elegans exposed to GO and rGO
GSE84894
Expression data from starved first larval stage of wildtype and hyl-1(ok976); lagr-1(gk327) C. elegans
GSE85342
A High-Content, Phenotypic Screen Identifies Fluorouridine as an Inhibitor of Pyoverdine Biosynthesis and Pseudomonas aeruginosa Virulence
GSE87052
NIPI-3 regulates the expression of C. elegans immune genes
GSE89614
Role of the MicroRNA Machinery in Fasting-Induced Gene Expression Changes and Longevity in C. elegans (mRNA)
GSE89624
Role of the MicroRNA Machinery in Fasting-Induced Gene Expression Changes and Longevity in C. elegans
GSE89731
Octopamine Enhances Oxidative Stress Resistance Through the Fasting-Responsive Transcription Factor DAF-16/FOXO in C. elegans
GSE94701
Expression data from mir-35-41(nDf50) mutant embryos grown at 20 degrees, compared to wild type
GSE94702
Expression data from mir-35-41(nDf50) mutant embryos grown at 25 degrees, compared to wild type
GSE94704
A microRNA family exerts maternal control on sex determination in C. elegans
GSE95510
Translocation of Pyoverdine into Host Cells Mediates Iron Removal and Activates a Specific Host Immune Response
GSE95603
Expression data from C. elegans treated with anatase TiO2 nanoparticles
GSE95636
Caenorhabditis elegans infected with Enterococcus
GSE96068
The RFX transcription factor gene, daf-19, has dual funcitons in ciliated and non-ciliated neurons
GSE97678
Interplay between mitochondria and diet mediates pathogen and stress resistance in C. elegans.
GSE99201
Wild-type and daf-16(mgDf50) L1 larvae 3 hours after hatching in the presence or absence of food
GSE100814
Tocotrienol Rich Fraction (TRF) Modulates Genes Expression in Oxidative Stress-Induced Caenorhabditis elegans
GSE118294
Differential Gene expression of C. elegans larvae following tunicamycin treatment in the absence of manf-1
GSE133667
Microarray based gene expression comparison between wild type and yap-1(ys38) C. elegans embyos
GSE137516
Novel Immune Modulators Enhance Caenorhabditis elegans Resistance to Multiple Pathogens
GSE143664
Altered Innate Immunity Confers Staphylococcus aureus Resistance in O-glycosylation Deficient Caenorhabditis elegans bus Mutants
GSE148325
Expression data for C. elegans blunt force trauma
GSE228851
Gene expression under short-term moderate hypoxia and in the HIF-1 negative regulator mutants in Caenorhabditis elegans
GSE235875
Transcriptional Control of Cell Fate Within the MS lineage in C. elegans
Relations
Alternative to
GPL13993 (Alternative CDF [Celegans_Ce_REFSEQ version 14.0.0])
Alternative to
GPL13995 (Alternative CDF [Celegans_Ce_REFSEQ version 13.0.0])
Alternative to
GPL18687 (Celegans_Ce_ENTREZG, Brainarray v16)
Alternative to
GPL19846 (ENTREZG version 19)
Alternative to
GPL32098 (Alternative CDF [Celegans_Ce_ENSG version 21])
Data table header descriptions
ID
Affymetrix Probe Set ID
GB_ACC
GenBank Accession Number
GI
GenBank GI Number
ORF
WormBase predicted gene identifier
SPOT_ID
Species Scientific Name
The genus and species of the organism represented by the probe set.
Annotation Date
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Sequence Source
The database from which the sequence used to design this probe set was taken.
Representative Public ID
The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Target Description
GenBank description associated with the representative public identifier. Blank for some probe sets.
Gene Title
Title of Gene represented by the probe set.
Gene Symbol
A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID
Entrez Gene Database UID
RefSeq Transcript ID
References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
WormBase
WormBase: The Genome and Biology of C. elegans
Gene Ontology Biological Process
Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component
Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function
Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Data table
ID
GB_ACC
GI
ORF
SPOT_ID
Species Scientific Name
Annotation Date
Sequence Type
Sequence Source
Representative Public ID
Target Description
Gene Title
Gene Symbol
ENTREZ_GENE_ID
RefSeq Transcript ID
WormBase
Gene Ontology Biological Process
Gene Ontology Cellular Component
Gene Ontology Molecular Function
171720_x_at
AV179929
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
AV179929
AV179929_rc /REP_DB=TREMBL Accession /GB=AV179929 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk600a5 : 3prime end, single read.
Protein SNX-14
snx-14
174997
NM_064443 /// NM_182150
0000003 // reproduction // inferred from mutant phenotype /// 0007154 // cell communication // inferred from electronic annotation /// 0038032 // termination of G-protein coupled receptor signaling pathway // inferred from electronic annotation
0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphatidylinositol binding // inferred from electronic annotation
171721_x_at
6767
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
GenBank
6767
g6767 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=T01G9.2B /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=T01G9.2B /WP=CE23937 /CHR=1 /FEA=Genomic Cluster
Protein T01G9.2
T01G9.2
172609
NM_059851 /// NM_171841
0005737 // cytoplasm // inferred from direct assay /// 0055120 // striated muscle dense body // inferred from direct assay
0005515 // protein binding // inferred from physical interaction
171722_x_at
AV189310
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
AV189310
AV189310 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F56B3.11A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV189310 /WB_GENE_ID=F56B3.11A /WP=CE25907 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk534f7 : 5prime end, single read.
Protein F56B3.11
F56B3.11
176907
NM_067590 /// NM_067591
0030150 // protein import into mitochondrial matrix // inferred from electronic annotation
0005744 // mitochondrial inner membrane presequence translocase complex // inferred from electronic annotation
171723_x_at
CEC7564
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
CEC7564
CEC7564 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F59D8.B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C11756 /WB_GENE_ID=F59D8.B /WP=CE20901 /CHR=X /FEA=Genomic Cluster /DEF=(ST.LOUIS) protein_id:AAF35967.1; C.elegans cDNA clone yk122a10 : 5prime end, single read.
Protein VIT-4 /// locus:vit-4
vit-4 /// WBGene00006928
180646
NM_076211
CE26817
0006869 // lipid transport // inferred from electronic annotation /// 0007281 // germ cell development // inferred from mutant phenotype /// 0008340 // determination of adult lifespan // inferred from mutant phenotype /// 0009792 // embryo development ending in birth or egg hatching // inferred from mutant phenotype /// 0018991 // oviposition // inferred from mutant phenotype
0005576 // extracellular region // inferred from electronic annotation
0005319 // lipid transporter activity // inferred from electronic annotation /// 0045735 // nutrient reservoir activity // inferred from electronic annotation
171724_x_at
AV178012
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
AV178012
AV178012_rc /REP_DB=TREMBL Accession /GB=AV178012 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk536g8 : 3prime end, single read.
Protein CDC-25.1 /// locus:cdc-25.1
cdc-25.1 /// WBGene00000386
172353
NM_059461
CE11778
0000003 // reproduction // inferred from mutant phenotype /// 0000212 // meiotic spindle organization // inferred from mutant phenotype /// 0006470 // protein dephosphorylation // inferred from electronic annotation /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007126 // meiotic nuclear division // inferred from mutant phenotype /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0009792 // embryo development ending in birth or egg hatching // inferred from mutant phenotype /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0051301 // cell division // inferred from mutant phenotype /// 0051729 // germline cell cycle switching, mitotic to meiotic cell cycle // inferred from mutant phenotype
0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay
0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation
171725_x_at
CEK070BXF
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
CEK070BXF
CEK070BXF /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F57B1.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D69451 /WB_GENE_ID=F57B1.4 /WP=CE11292 /CHR=5 /FEA=Genomic Cluster /DEF=collagen; C.elegans cDNA clone yk70b10 : 5prime end, single read.
Protein COL-160 /// locus:col-160
col-160 /// WBGene00000733
179804
NM_073883
CE31962
0042302 // structural constituent of cuticle // inferred from electronic annotation
171726_x_at
CEK102A3R
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
CEK102A3R
CEK102A3R_rc /REP_DB=TREMBL Accession /GB=D66524 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk102a3 : 3prime end, single read.
Protein DPY-21
dpy-21
180176
NM_001029095 /// NR_002407
0000805 // X chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
171727_x_at
AV181762
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
AV181762
AV181762_rc /REP_DB=TREMBL Accession /GB=AV181762 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk624e3 : 3prime end, single read.
Protein CYP-23A1 /// locus:cyp-23A1
cyp-23A1 /// WBGene00015135
173787
NM_062396
CE27050
0040011 // locomotion // inferred from mutant phenotype /// 0055114 // oxidation-reduction process // inferred from electronic annotation
0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
171728_x_at
2826834
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
GenBank
2826834
g2826834 /REP_DB=GenBank Identifier /CHR=5 /FEA=Genomic Cluster
Protein NCX-2
ncx-2
178918
NM_001028472 /// NM_001028473 /// NM_072013 /// NM_072014
0006816 // calcium ion transport // inferred from electronic annotation /// 0007154 // cell communication // inferred from electronic annotation /// 0035725 // sodium ion transmembrane transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from electronic annotation
0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation
0005432 // calcium:sodium antiporter activity // inferred from electronic annotation
171729_x_at
CEK074D4F
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
CEK074D4F
CEK074D4F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0286.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D74058 /WB_GENE_ID=B0286.4 /WP=CE03864 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk74d4 : 5prime end, single read.
Protein NTL-2
ntl-2
173773
NM_001047261 /// NM_062371 /// NM_062372 /// NM_062373
0000003 // reproduction // inferred from mutant phenotype /// 0002119 // nematode larval development // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0009792 // embryo development ending in birth or egg hatching // inferred from mutant phenotype /// 0019915 // lipid storage // inferred from mutant phenotype /// 0040007 // growth // inferred from mutant phenotype /// 0040011 // locomotion // inferred from mutant phenotype /// 0040018 // positive regulation of multicellular organism growth // inferred from mutant phenotype /// 0040035 // hermaphrodite genitalia development // inferred from mutant phenotype
0005634 // nucleus // inferred from electronic annotation
0005515 // protein binding // inferred from physical interaction
171730_x_at
4680194
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
GenBank
4680194
g4680194-REP_DB=GenBank Identifier /5_PRIME_EXT_ID=g4680194 /5_PRIME_EXT_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster /GEN=vap-1 /DEF=venom allergen-like protein
Protein VAP-1
vap-1
181768
NM_001029382 /// NM_171818
0040011 // locomotion // inferred from mutant phenotype
0005576 // extracellular region // inferred from electronic annotation
171731_x_at
CEK044A9R
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
CEK044A9R
CEK044A9R_rc /REP_DB=TREMBL Accession /GB=D34307 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk44a9 : 3prime end, single read.
Protein SWSN-7 /// locus:swsn-7
swsn-7 /// WBGene00007433
174286
NM_063278
CE01473
0002119 // nematode larval development // inferred from mutant phenotype /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006898 // receptor-mediated endocytosis // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0009792 // embryo development ending in birth or egg hatching // inferred from mutant phenotype /// 0010171 // body morphogenesis // inferred from mutant phenotype /// 0040035 // hermaphrodite genitalia development // inferred from mutant phenotype /// 0071688 // striated muscle myosin thick filament assembly // inferred from mutant phenotype
0005622 // intracellular // inferred from electronic annotation
0003677 // DNA binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
171732_x_at
8515820
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
GenBank
8515820
g8515820 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=ZK637.7 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=ZK637.7 /WP=CE00437 /CHR=3 /FEA=Genomic Cluster /GEN=lin-9 /DEF=LIN-9L; locus:lin-9 (HINXTON) SW:P30630 protein_id:CAA77454.1
Protein LIN-9
lin-9
176256
NM_001027844 /// NM_001027845
0000003 // reproduction // inferred from mutant phenotype /// 0002119 // nematode larval development // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008406 // gonad development // inferred from mutant phenotype /// 0008584 // male gonad development // inferred from mutant phenotype /// 0009792 // embryo development ending in birth or egg hatching // inferred from mutant phenotype /// 0010171 // body morphogenesis // inferred from mutant phenotype /// 0040011 // locomotion // inferred from mutant phenotype /// 0040027 // negative regulation of vulval development // inferred from genetic interaction /// 0040027 // negative regulation of vulval development // inferred from mutant phenotype /// 0040035 // hermaphrodite genitalia development // inferred from mutant phenotype /// 0045138 // tail tip morphogenesis // inferred from mutant phenotype
0005634 // nucleus // inferred from electronic annotation /// 0017053 // transcriptional repressor complex // inferred from electronic annotation /// 0070176 // DRM complex // inferred from direct assay
171733_x_at
AV178000
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
AV178000
AV178000_rc /REP_DB=TREMBL Accession /GB=AV178000 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk536f4 : 3prime end, single read.
Protein ZIP-8
zip-8
175924
NM_066025 /// NM_181936
0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation
0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation
171734_x_at
CEK100E6F
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
CEK100E6F
CEK100E6F /REP_DB=TREMBL Accession /GB=D70214 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk100e6 : 5prime end, single read.
Protein TAG-174 /// locus:tag-174
tag-174 /// WBGene00006519
175693
NM_065681
CE01308
0000003 // reproduction // inferred from mutant phenotype /// 0008340 // determination of adult lifespan // inferred from mutant phenotype /// 1902600 // hydrogen ion transmembrane transport // inferred from electronic annotation
0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005751 // mitochondrial respiratory chain complex IV // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation
0004129 // cytochrome-c oxidase activity // inferred from electronic annotation
171735_x_at
CEK072GXR
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
CEK072GXR
CEK072GXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T06E4.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D66041 /WB_GENE_ID=T06E4.4 /WP=CE06370 /CHR=5 /FEA=Genomic Cluster /DEF=collagen; C.elegans cDNA clone yk72g10 : 3prime end, single read.
Protein COL-147 /// locus:col-147
col-147 /// WBGene00000720
179351
NM_073085
CE06370
0009792 // embryo development ending in birth or egg hatching // inferred from mutant phenotype
0042302 // structural constituent of cuticle // inferred from electronic annotation
171736_x_at
1203791
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
GenBank
1203791
g1203791 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F44A6.2A /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F44A6.2A /WP=CE03323 /CHR=X /FEA=Genomic Cluster /GEN=cnr14; sex-1 /DEF=steroid hormone receptor family member CNR14; nuclear hormone receptor
Protein SEX-1 /// locus:sex-1
sex-1 /// WBGene00004786
181231
NM_001029491
CE03323
0000003 // reproduction // inferred from mutant phenotype /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0002119 // nematode larval development // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007538 // primary sex determination // inferred from genetic interaction /// 0007538 // primary sex determination // inferred from mutant phenotype /// 0009792 // embryo development ending in birth or egg hatching // inferred from mutant phenotype /// 0010171 // body morphogenesis // inferred from mutant phenotype /// 0040035 // hermaphrodite genitalia development // inferred from mutant phenotype /// 0042464 // dosage compensation by hypoactivation of X chromosome // inferred from genetic interaction /// 0043401 // steroid hormone mediated signaling pathway // inferred from electronic annotation
0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
0000977 // RNA polymerase II regulatory region sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003707 // steroid hormone receptor activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
171737_x_at
C51771
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
C51771
C51771_rc /REP_DB=TREMBL Accession /GB=C51771 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk214e5 : 3prime end, single read.
Protein T12G3.1
T12G3.1
178139
NM_001268679 /// NM_001268680
0005737 // cytoplasm // inferred from direct assay
0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation
171738_x_at
790603
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
GenBank
790603
g790603 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=B0350.2C /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=B0350.2C /WP=CE06704 /CHR=4 /FEA=Genomic Cluster /GEN=unc-44
Protein UNC-44
unc-44
177366
NM_001026095 /// NM_001026096 /// NM_001026097 /// NM_001026098 /// NM_068497 /// NM_068500 /// NM_171907
0007126 // meiotic nuclear division // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation /// 0007411 // axon guidance // inferred from mutant phenotype /// 0010171 // body morphogenesis // inferred from mutant phenotype /// 0016358 // dendrite development // inferred from mutant phenotype /// 0033563 // dorsal/ventral axon guidance // inferred from genetic interaction /// 0040011 // locomotion // inferred from mutant phenotype /// 0040018 // positive regulation of multicellular organism growth // inferred from mutant phenotype
0016328 // lateral plasma membrane // inferred from direct assay
0005515 // protein binding // inferred from electronic annotation /// 0050839 // cell adhesion molecule binding // inferred from physical interaction
171739_x_at
C58760
Caenorhabditis elegans
Oct 6, 2014
Exemplar sequence
Affymetrix Proprietary Database
C58760
C58760_rc /REP_DB=TREMBL Accession /GB=C58760 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk377d12 : 3prime end, single read.
Protein F35A5.1 /// status:Partially_confirmed
F35A5.1 /// WBGene00018024
259699
NM_076261
CE45013
Total number of rows: 22625 Table truncated, full table size 15734 Kbytes .
Supplementary data files not provided