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Series GSE12298 Query DataSets for GSE12298
Status Public on Jun 03, 2009
Title Caenorhabditis elegans as a Genomic Model for Toxicology
Organism Caenorhabditis elegans
Experiment type Expression profiling by array
Summary Effective toxicological testing of the vast number of new and existing chemicals currently in use will require efficient and cost effective methods. We evaluated the utility of a simple, low cost toxicity testing system employing the nematode Caenorhabditis elegans to identify toxicologically relevant changes in gene expression.
Dichlorvos and fenamiphos, which are organophosphorous pesticides that inhibit acetylcholinesterase were chosen as model toxicants to test the usefulness of the C. elegans toxicity testing system, and mefloquine, which appears to perturb neuronal Ca++ homeostasis, provided an out-group for analysis.

Keywords: gene expression array-based (RNA / in situ oligonucleotide)
 
Overall design Concentrations of dichlorvos, fenamiphos, or mefloquine sufficient to prevent the development of 10%, 50%, or 90% of mid-vulval L4 worms to the early gravid adult stage at 24 h after exposure were determined in range finding experiments. For definitive experiments, mid-vulval L4 worms were exposed to one of the foregoing concentrations of dichlorvos, fenamiphos, or mefloquine for 8h. Exposures were performed in triplicate.
 
Contributor(s) Lewis JA, Szilagyi M, Gehman E, Dennis WE, Jackson DA
Citation(s) 19402892
Submission date Jul 30, 2008
Last update date Jul 06, 2016
Contact name John A. Lewis
E-mail(s) john.a.lewis1@us.army.mil
URL http://usacehr.amedd.army.mil
Organization name U.S. Army Center for Environmental Health Research
Department Biomarkers Program
Street address 568 Doughten Drive
City Ft. Detrick
State/province MD
ZIP/Postal code 21702-5010
Country USA
 
Platforms (1)
GPL200 [Celegans] Affymetrix C. elegans Genome Array
Samples (36)
GSM309200 mefloquine_control-rep1
GSM309201 mefloquine_low_dose-rep1
GSM309202 mefloquine_mid_dose-rep1
Relations
BioProject PRJNA113595

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE12298_RAW.tar 125.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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