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Platform GPL891 Query DataSets for GPL891
Status Public on Jan 02, 2004
Title Agilent-011978 Mouse Microarray G4121A (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4121A
 
Description Mouse is the most widely used mammalian model in biological research and target identification. This microarray will enable researchers to simultaneously characterize expression activities of many thousands of mouse genes associated with various biological functions and processes. Content for this empirically validated microarray includes a comprehensive set of toxicology markers determined through collaboration with leaders in toxicogenomics including NIEHS, Toxicogenomics Research Consortium, and Paradigm Genetics

Arrays of this design have barcodes that begin with 16011978 or 2511978.

Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL6466.
 
Submission date Jan 02, 2004
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (1505) GSM25980, GSM25981, GSM25982, GSM25983, GSM26750, GSM26751 
Series (54)
GSE1501 Classification of Antipsychotic Drugs by Gene Expression in the Frontal Cortex of Mice
GSE1560 Aortas of mice on high fat diet
GSE1580 Analysis of murine epididymal adipose tissue
Relations
Alternative to GPL6466

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
1 105 215 BrightCorner BrightCorner pos
2 105 214 NegativeControl NegativeControl neg
3 105 213 NM_133204 A_51_P218104 FALSE NM_133204 NM_133204 170734 Zfp371 zinc finger protein 371 Mm.155595 NP435215 ref|NM_133204|gb|AK139659|gb|AF204776|riken|B020008M15 chr7:5799660-5799719 mm|7qA1 Mus musculus zinc finger protein 371 (Zfp371), mRNA [NM_133204] GO:0005634(nucleus)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding) AGAAATGGAGGTTGGGTTGCCCCTATTCTGAGAGTCTCATCCCTTCATGGTCATTGTATA
4 105 212 NM_134165 A_51_P137188 FALSE NM_134165 NM_134165 171183 V1rc10 vomeronasal 1 receptor, C10 Mm.377164 ENSMUST00000077482 NP518917 ref|NM_134165|ref|NM_134166|ens|ENSMUST00000077482|ens|ENSMUST00000075750 chr6:66713325-66713384 mm|6qC1 Mus musculus vomeronasal 1 receptor, C10 (V1rc10), mRNA [NM_134165] GO:0004872(receptor activity)|GO:0005550(pheromone binding)|GO:0005887(integral to plasma membrane)|GO:0016503(pheromone receptor activity)|GO:0019236(response to pheromone) TAATGATGTTTCTCACTGGAGGGCATGCTTGGCTTAAAGATTTCTTAGGGTCATTGAACA
5 105 211 NM_007507 A_51_P301289 FALSE NM_007507 NM_007507 11958 Atp5k ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e Mm.136093 NP459162 ref|NM_007507|gb|S52977|gb|BC089550|gb|BC028438 chr5:107614972-107614717 mm|5qF Mus musculus ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e (Atp5k), mRNA [NM_007507] GO:0005739(mitochondrion)|GO:0006754(ATP biosynthesis)|GO:0006810(transport)|GO:0006811(ion transport)|GO:0015078(hydrogen ion transporter activity)|GO:0015986(ATP synthesis coupled proton transport)|GO:0015992(proton transport)|GO:0016469(proton-transporting two-sector ATPase complex)|GO:0045263(proton-transporting ATP synthase complex, coupling factor F(o))|GO:0046872(metal ion binding)|GO:0046933(hydrogen-transporting ATP synthase activity, rotational mechanism)|GO:0046961(hydrogen-transporting ATPase activity, rotational mechanism) CGGCGCCAAGCGCTACAGTTACCTAAAACCCCGGGCAGAGGAGGAGAGGAGAATAGCAGC
6 105 210 NM_144512 A_51_P438083 FALSE NM_144512 NM_144512 14412 Slc6a13 solute carrier family 6 (neurotransmitter transporter, GABA), member 13 Mm.258596 ENSMUST00000064580 NP481351 ref|NM_144512|gb|BC029637|gb|AK149557|ens|ENSMUST00000064580 chr6:121362880-121362939 mm|6qF1 Mus musculus solute carrier family 6 (neurotransmitter transporter, GABA), member 13 (Slc6a13), mRNA [NM_144512] GO:0005328(neurotransmitter:sodium symporter activity)|GO:0005332(gamma-aminobutyric acid:sodium symporter activity)|GO:0005887(integral to plasma membrane)|GO:0006810(transport)|GO:0006836(neurotransmitter transport)|GO:0015293(symporter activity)|GO:0016020(membrane)|GO:0016021(integral to membrane) GGTCCACACATTGTGACGTGCCCGAATCAATAACATCCCATTGAGGCAGCTTGGGAAGCC
7 105 209 Pro25G Pro25G pos
8 105 208 NM_172443 A_51_P412225 FALSE NM_172443 NM_172443 207592 Tbc1d16 TBC1 domain family, member 16 Mm.383265 ENSMUST00000036113 NP588786 ref|NM_172443|gb|BC057634|gb|AK047555|ens|ENSMUST00000036113 chr11:119256258-119256199 mm|11qE2 Mus musculus TBC1 domain family, member 16 (Tbc1d16), mRNA [NM_172443] TTGTTGTCTGAGTGAACCAAGCACACTTGCGAAGCTTCATGGTCACAGCTGCAAGACTGG
9 105 207 NM_173184 A_51_P201580 FALSE NM_173184 NM_173184 212108 Rln3 relaxin 3 Mm.261583 ENSMUST00000061923 TC1548190 ref|NM_173184|gb|CB058792|gb|AB076565|ens|ENSMUST00000061923 chr8:82621274-82621215 mm|8qC2 Mus musculus relaxin 3 (Rln3), mRNA [NM_173184] GO:0005179(hormone activity)|GO:0005576(extracellular region)|GO:0007582(physiological process)|GO:0030819(positive regulation of cAMP biosynthesis) GCTGTAGCAAGAGCCAAATTAGCAGCTTGTGCTAGGATCAGGGTTGAGCAATGGAGAAGC
10 105 206 XM_978574 A_51_P521155 FALSE XM_978574 XM_978574 76998 1700124P09Rik RIKEN cDNA 1700124P09 gene Mm.246849 TC1538068 ref|XM_978574|ref|XM_884388|ref|XM_992824|ref|XM_923398 chr9:109466763-109466704 mm|9qF2 PREDICTED: Mus musculus RIKEN cDNA 1700124P09 gene (1700124P09Rik), mRNA [XM_978574] ATGTATATGCATGGGAGGAGAGAAGCCTGCTGCTCAGGAAGTGTTATCGACTGAAAAACA
11 105 205 NM_011792 A_51_P167963 FALSE NM_011792 NM_011792 23821 Bace1 beta-site APP cleaving enzyme 1 Mm.24044 ENSMUST00000034591 NP576093 ref|NM_011792|gb|BC048189|gb|AK046175|ens|ENSMUST00000034591 chr9:45819517-45819574 mm|9qA5.2 Mus musculus beta-site APP cleaving enzyme 1 (Bace1), mRNA [NM_011792] GO:0004175(endopeptidase activity)|GO:0004190(aspartic-type endopeptidase activity)|GO:0004194(pepsin A activity)|GO:0006508(proteolysis)|GO:0008233(peptidase activity)|GO:0009049(aspartic-type signal peptidase activity)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016787(hydrolase activity)|GO:0030424(axon)|GO:0031410(cytoplasmic vesicle) TGCCTGGATTTTGTTTTTATTTTCTTTCTTTTTGCCCAAGTGGGTACAAAACGATAAGCT
12 105 204 XM_994605 A_51_P158814 FALSE XM_994605 XM_994605 277010 Marveld1 MARVEL (membrane-associating) domain containing 1 Mm.206250 TC1500102 ref|XM_994605|ref|XM_977387|gb|AK081212|riken|C030005I21 chr19:42043505-42043564 mm|19qC3 PREDICTED: Mus musculus MARVEL (membrane-associating) domain containing 1 (Marveld1), mRNA [XM_994605] GO:0005554(molecular function unknown)|GO:0008372(cellular component unknown) CCACTGTTGTTACTAACTCAAGCTCTGCTTTCTCTGGAAACAGGACATAGGACACTGCAT
13 105 203 NM_008825 A_51_P335251 FALSE NM_008825 NM_008825 18640 Pfkfb2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Mm.249861 ENSMUST00000066863 NP583472 ref|NM_008825|gb|X98847|gb|AK029659|gb|AK146744 chr1:130603309-130602806 mm|1qE4 Mus musculus 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 (Pfkfb2), mRNA [NM_008825] GO:0000166(nucleotide binding)|GO:0003824(catalytic activity)|GO:0003873(6-phosphofructo-2-kinase activity)|GO:0004331(fructose-2,6-bisphosphate 2-phosphatase activity)|GO:0005524(ATP binding)|GO:0006003(fructose 2,6-bisphosphate metabolism)|GO:0008152(metabolism)|GO:0016301(kinase activity)|GO:0016740(transferase activity)|GO:0016787(hydrolase activity) CCCCTGCACATCATCTTCAAACTTACTCCTGTGGCCTATGGTTGCAAAGTGGAAACAATT
14 105 202 Pro25G Pro25G pos
15 105 201 NM_010407 A_51_P499910 FALSE NM_010407 NM_010407 15162 Hck hemopoietic cell kinase Mm.715 ENSMUST00000003370 NP853450 ref|NM_010407|gb|AK150709|gb|BC010478|ens|ENSMUST00000003370 chr2:152892206-152892265 mm|2qH1 Mus musculus hemopoietic cell kinase (Hck), mRNA [NM_010407] GO:0000166(nucleotide binding)|GO:0004672(protein kinase activity)|GO:0004674(protein serine/threonine kinase activity)|GO:0004713(protein-tyrosine kinase activity)|GO:0005524(ATP binding)|GO:0006468(protein amino acid phosphorylation)|GO:0007242(intracellular signaling cascade)|GO:0016020(membrane)|GO:0016301(kinase activity)|GO:0016740(transferase activity) GAATGACTGAATTCAATCTATAGCTGTGATTTAAGTGGAAACTGTTAGAATAGTATTTAA
16 105 200 AK038079 A_51_P412611 FALSE AK038079 380977 A330009N23Rik RIKEN cDNA A330009N23 gene Mm.120798 gb|AK038079|gb|AK039268|riken|A330009N23|riken|A130076P06 chr15:101207716-101207657 mm|15qF2 Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130076P06 product:unclassifiable, full insert sequence [AK038079] TGGAAACCTTGCCATATTTTGGGATCCCATACAGCATTTGTTCCTCCAGGAGGATCTGTA
17 105 199 BC049727 A_51_P449657 FALSE XM_900638 BC049727 71996 1600014K23Rik RIKEN cDNA 1600014K23 gene Mm.20201 ENSMUST00000048382 NP358346 gb|BC049727|ens|ENSMUST00000048382|ref|XM_900638|ref|XM_921301 chrX:80656859-80656918 mm|XqC1 Mus musculus, clone IMAGE:6770312, mRNA. [BC049727] CCCGCATTATATTTCTAGAAGCTTCCCCTGTCTTTCTGTTTGGCATTCTTTGCAATAAAT
18 105 198 NM_178606 A_51_P206346 FALSE NM_178606 NM_178606 28193 D10Ucla1 DNA segment, Chr 10, University of California at Los Angeles 1 Mm.396104 ENSMUST00000020023 NP804919 ref|NM_178606|ens|ENSMUST00000020023|gb|AK028868|gb|AK005026 chr10:66598621-66598562 mm|10qB5.1 Mus musculus DNA segment, Chr 10, University of California at Los Angeles 1 (D10Ucla1), mRNA [NM_178606] TTAAACTTACCCTTAGGAGCTAAGGATAGACACCATGCTTGAGGTACACAAGGCCTTGAG
19 105 197 NM_183256 A_51_P291839 FALSE NM_183256 NM_183256 66379 2310016M24Rik RIKEN cDNA 2310016M24 gene Mm.5265 ENSMUST00000023761 NP842952 ref|NM_183256|ens|ENSMUST00000023761|gb|BC092142|gb|AK009401 chr15:99713227-99713286 mm|15qF1 Mus musculus RIKEN cDNA 2310016M24 gene (2310016M24Rik), mRNA [NM_183256] GAGGCCATCAAGTAAATGGGAATGTGAGGGTGAGGTTTATTACAGAGATTAAATATTTTG
20 105 196 NM_145388 A_51_P365378 FALSE NM_145388 NM_145388 212989 Vmd2l1 vitelliform macular dystrophy 2-like protein 1 Mm.215154 ENSMUST00000059072 NP647466 ref|NM_145388|gb|BC036163|ens|ENSMUST00000059072|ens|ENSMUST00000078720 chr8:83595694-83595635 mm|8qC2 Mus musculus vitelliform macular dystrophy 2-like protein 1 (Vmd2l1), mRNA [NM_145388] GO:0005216(ion channel activity)|GO:0005254(chloride channel activity)|GO:0005509(calcium ion binding)|GO:0006810(transport)|GO:0006811(ion transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0031404(chloride ion binding) ACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTCGAGTGGAATTG

Total number of rows: 22575

Table truncated, full table size 11422 Kbytes.






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Supplementary file Size Download File type/resource
GPL891_old_annotations.txt.gz 3.3 Mb (ftp)(http) TXT

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