NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM37681 Query DataSets for GSM37681
Status Public on Feb 15, 2005
Title lens455
Sample type RNA
 
Channel 1
Source name Elongating fiber cells from the lens of mice (strain TgN(GFPU)5Nagy (Jackson Laboratory, Bar Harbor, ME))
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Mature fiber cells from the lens of mice (strain TgN(GFPU)5Nagy (Jackson Laboratory, Bar Harbor, ME))
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Lenses were removed and immediately fixed using 4% paraformaldehide or methanol-based UMFIX reagent (Sakura Finetek USA, Inc.). To map the exact location of both elongating and maturing fibers on the lens slices, lenses were vibratome-sliced (Vibratome 1000, St. Louis, MO) as described previously and the GFP expression pattern was captured by confocal microscopy. For RNA extraction lens tissue was sliced into 5 micron-thick paraffin sections and microdissected using LCM (Leica Microsystems, Bannockburn, IL). The mid-saggital slices were used both for syncytium border measurements and for LCM. Control measurement (data not shown) confirmed that similar rates of shrinkage in paraformaldehyde- and UMFIX-fixed samples did not affect precision of LCM dissection.
Keywords = mouse
Keywords = lens
Keywords = eye
Keywords = fiber cells
 
Submission date Dec 16, 2004
Last update date May 27, 2005
Contact name Valery I. Shestopalov
E-mail(s) vshestopalov@med.miami.edu
Phone 305-547-3680
Fax 305-547-3658
Organization name University of Miami
Department Ophtalmology
Lab Shestopalov lab
Street address 1638 NW 10 Ave
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
 
Platform ID GPL891
Series (1)
GSE2083 Microarray analysis of the fiber cell maturation in the lens

Data table header descriptions
ID_REF
VALUE Dye and Lowess normalized Log Ratio 635/532
NormRed Dye normalized (median Cy5 signal intensity minus background)
NormGreen Dye normalized (median Cy3 signal intensity minus background)

Data table
ID_REF VALUE NormRed NormGreen
1 -2.764 302.121 969.3
2 -0.081 12.946 131.514
3 0.416 216.509 163.365
4 0.564 177.669 145.213
5 -0.004 4169.858 1344.434
6 0.23 76.026 141.583
7 -3.954 163.93 1281.026
8 0.538 31.402 113.751
9 0.227 26.444 125.852
10 0.755 41.318 107.7
11 0.343 568.542 250.493
12 0.457 146.267 145.213
13 0.447 656.963 256.544
14 -3.954 163.93 1281.026
15 0.486 10.743 104.07
16 0.507 87.595 129.482
17 0.368 1537.046 473.154
18 0.569 948.672 298.898
19 0.288 3388.939 937.837
20 0.414 609.034 250.493

Total number of rows: 22575

Table truncated, full table size 609 Kbytes.




Supplementary file Size Download File type/resource
GSM37681.tif.gz 38.0 Mb (ftp)(http) TIFF

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap