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Sample GSM37680 Query DataSets for GSM37680
Status Public on Feb 15, 2005
Title lens493
Sample type RNA
 
Channel 1
Source name Mature fiber cells from the lens of mice (strain TgN(GFPU)5Nagy (Jackson Laboratory, Bar Harbor, ME))
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Elongating fiber cells from the lens of mice (strain TgN(GFPU)5Nagy (Jackson Laboratory, Bar Harbor, ME))
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Lenses were removed and immediately fixed using 4% paraformaldehide or methanol-based UMFIX reagent (Sakura Finetek USA, Inc.). To map the exact location of both elongating and maturing fibers on the lens slices, lenses were vibratome-sliced (Vibratome 1000, St. Louis, MO) as described previously and the GFP expression pattern was captured by confocal microscopy. For RNA extraction lens tissue was sliced into 5 micron-thick paraffin sections and microdissected using LCM (Leica Microsystems, Bannockburn, IL). The mid-saggital slices were used both for syncytium border measurements and for LCM. Control measurement (data not shown) confirmed that similar rates of shrinkage in paraformaldehyde- and UMFIX-fixed samples did not affect precision of LCM dissection.
Keywords = mouse
Keywords = lens
Keywords = eye
Keywords = fiber cells
 
Submission date Dec 16, 2004
Last update date May 27, 2005
Contact name Valery I. Shestopalov
E-mail(s) vshestopalov@med.miami.edu
Phone 305-547-3680
Fax 305-547-3658
Organization name University of Miami
Department Ophtalmology
Lab Shestopalov lab
Street address 1638 NW 10 Ave
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
 
Platform ID GPL891
Series (1)
GSE2083 Microarray analysis of the fiber cell maturation in the lens

Data table header descriptions
ID_REF
VALUE Dye and Lowess normalized Log Ratio 635/532
NormRed Dye normalized (median Cy5 signal intensity minus background)
NormGreen Dye normalized (median Cy3 signal intensity minus background)

Data table
ID_REF VALUE NormRed NormGreen
1 -1.629 147.939 356.631
2 -0.111 34.04 71.961
3 0.086 80.624 95.331
4 0.395 81.904 82.047
5 0.542 4395.948 2001.168
6 0.297 71.666 81.266
7 -2.584 85.879 429.326
8 -0.025 24.315 63.293
9 -0.242 23.036 68.763
10 0.39 43.512 64.075
11 0.466 186.844 124.243
12 0.386 79.345 81.266
13 0.309 272.587 176.597
14 -2.584 85.879 429.326
15 0.432 31.994 56.261
16 0.701 47.351 57.042
17 0.358 500.383 275.053
18 -0.264 638.596 510.255
19 -0.307 2006.651 1622.97
20 0.454 252.111 153.155

Total number of rows: 22575

Table truncated, full table size 602 Kbytes.




Supplementary file Size Download File type/resource
GSM37680.tif.gz 39.9 Mb (ftp)(http) TIFF

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