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| Status |
Public on Jul 27, 2004 |
| Title |
Analysis of murine liver tissue |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
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| Summary |
Functional genomic analysis of liver tissue extracted from polygenic obese mice fed either a control (1% linoleic acid) or treatment (1% trans 10, cis 12 conjugated linoleic acid) diet after fourteen days.
Keywords = Obesity
Keywords = conjugated linoleic acid
Keywords = polygenic obese mice
Keywords = lipid metabolism
Keywords: repeat sample
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| Contributor(s) |
House RL, Cassady JP, Eisen EJ, Eling TE, Odle J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Jul 23, 2004 |
| Last update date |
Dec 06, 2012 |
| Contact name |
Jack Odle |
| E-mail(s) |
jack_odle@ncsu.edu
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| Phone |
(919) 515-4050
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| Organization name |
North Carolina State University
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| Department |
Functional Genomics/Animal Science
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| Lab |
Jack Odle, Joe Cassady, Gene Eisen
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| Street address |
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| City |
Raleigh |
| State/province |
NC |
| ZIP/Postal code |
27603 |
| Country |
USA |
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| Platforms (1) |
| GPL891 |
Agilent-011978 Mouse Microarray G4121A (Feature Number version) |
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| Samples (4)
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| Relations |
| BioProject |
PRJNA90743 |
| Table 1: Lvr_14d_all header descriptions |
| Accession # |
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| Gene Description |
|
| Ratio (CLA:LA) |
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| Fold Change |
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| P-value |
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| Data table |
| Accession # |
Gene Description |
Ratio (CLA:LA) |
Fold Change |
P-value |
| NM_023716 |
Mus musculus RIKEN cDNA 2410129E14 gene (2410129E14Rik), mRNA. |
0.9 |
-1.12 |
0.33 |
| AK014270 |
RIKEN cDNA 3110082D06 gene |
1.26 |
1.26 |
5.60E-03 |
| BM934198.1 |
Mus musculus cDNA clone UI-M-CG0p-bmu-a-08-0-UI 5 |
1.07 |
1.07 |
0.24 |
| NM_021414.1 |
Mus musculus RIKEN cDNA 4631427C17 gene (4631427C17Rik), mRNA |
0.99 |
-1.01 |
0.92 |
| AK006330 |
RIKEN cDNA 1700025D19 gene |
0.93 |
-1.07 |
0.71 |
| BC013508 |
RIKEN cDNA 9130017N09 gene |
1.28 |
1.28 |
0.13 |
| NM_019799 |
Rhesus blood group-associated C glycoprotein |
0.97 |
-1.03 |
0.78 |
| AK016765 |
RIKEN cDNA 4933411C14 gene |
0.82 |
-1.22 |
0.3 |
| AK013591 |
Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900024M11, full insert sequence. |
0.89 |
-1.12 |
0.24 |
| NM_147091.1 |
Mus musculus olfactory receptor MOR14-3 (MOR14-3), mRNA |
0.93 |
-1.08 |
0.45 |
| AJ272345 |
RIKEN cDNA 2810055E05 gene |
1.02 |
1.02 |
0.86 |
| AK033603 |
similar to MLZE [Mus musculus] |
1.1 |
1.1 |
0.38 |
| NM_007443 |
alpha 1 microglobulin/bikunin |
1.24 |
1.24 |
0.21 |
| AK017111 |
RIKEN cDNA 4933438K21 gene |
0.98 |
-1.02 |
0.86 |
| AF038572 |
jagged 2 |
1.26 |
1.26 |
0.37 |
| AF061933 |
regulator of G-protein signaling 6 |
1.04 |
1.04 |
0.81 |
| AK039745 |
weakly similar to 8430428J23RIK PROTEIN [Mus musculus] |
0.82 |
-1.22 |
0.19 |
| AK008968 |
RIKEN cDNA 2210417J23 gene |
1.01 |
1.01 |
0.97 |
| BG921747 |
expressed sequence AI256638 |
1.05 |
1.05 |
0.61 |
| NM_022885 |
zinc transporter like 1 |
1.12 |
1.12 |
0.18 |
Total number of rows: 20837
Table truncated, full table size 1501 Kbytes.
| Table 2: Lvr_14d_p01 header descriptions |
| Accession # |
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| Gene Description |
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| Ratio (CLA:LA) |
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| Fold Change |
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| P-value |
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| Data table |
| Accession # |
Gene Description |
Ratio (CLA:LA) |
Fold Change |
P-value |
| AK014270 |
RIKEN cDNA 3110082D06 gene |
1.26 |
1.26 |
5.60E-03 |
| NM_008376 |
immunity-associated protein, 38 kDa |
1.56 |
1.56 |
2.39E-03 |
| NM_019710 |
SMC (structural maintenance of chromosomes 1)-like 1 (S. cerevisiae) |
1.19 |
1.19 |
9.03E-03 |
| AK045667 |
weakly similar to GLUTAMINE REPEAT PROTEIN-1 [Mus musculus] |
0.74 |
-1.35 |
5.21E-03 |
| BB391583 |
ESTs, Highly similar to IRE2 RAT IRON-RESPONSIVE ELEMENT BINDING PROTEIN 2 [R.norvegicus] |
0.49 |
-2.04 |
4.57E-08 |
| NM_018872 |
RW1 protein |
0.67 |
-1.49 |
9.17E-04 |
| NM_011795 |
C1q related factor |
1.31 |
1.31 |
4.07E-03 |
| AK031314 |
hypothetical Reprolysin family propeptide containing protein |
1.17 |
1.17 |
8.32E-03 |
| AK038837 |
RHO-RELATED GTP-BINDING PROTEIN RIF (RHO IN FILOPODIA) homolog [Homo sapiens] |
1.6 |
1.6 |
2.73E-06 |
| AK051365 |
similar to ZINC FINGER PROTEIN 126 (HZF-2) (FRAGMENT) [Homo sapiens] |
0.76 |
-1.31 |
3.17E-03 |
| NG_002148.1 |
Mus musculus olfactory receptor MOR0-2P (MOR0-2P) pseudogene |
0.76 |
-1.32 |
2.03E-03 |
| NM_026066 |
Mus musculus chemokine-like factor super family 5 (Cklfsf5), mRNA. |
0.75 |
-1.34 |
7.98E-03 |
| BC005711 |
expressed sequence AA589600 |
1.48 |
1.48 |
8.57E-05 |
| NM_011137 |
POU domain, class 2, transcription factor 1 |
0.63 |
-1.59 |
5.02E-08 |
| AK004604 |
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 |
0.65 |
-1.55 |
5.09E-07 |
| BE570772 |
expressed sequence AU014659 |
0.73 |
-1.37 |
8.89E-03 |
| NM_026368 |
Mus musculus RIKEN cDNA 5830433M19 gene (5830433M19Rik), mRNA. |
0.62 |
-1.6 |
6.80E-04 |
| BC009664 |
Mus musculus, Similar to myeloid cell nuclear differentiation antigen, clone MGC:7442 IMAGE:3489512, mRNA, complete cds |
0.7 |
-1.42 |
5.64E-05 |
| AK011543 |
RIKEN cDNA 2610024P03 gene |
0.54 |
-1.87 |
5.98E-03 |
| BU851393 |
Mus musculus cDNA, 5 end |
0.72 |
-1.38 |
4.78E-03 |
Total number of rows: 1393
Table truncated, full table size 106 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSE1594_RAW.tar |
112.3 Mb |
(http)(custom) |
TAR (of TIFF) |
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