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GEO accession:
Series GSE59352
Query DataSets for GSE59352
Status
Public on Nov 26, 2014
Title
Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics
Organism
Homo sapiens
Experiment type
Methylation profiling by genome tiling array
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
25587359
Submission date
Jul 11, 2014
Last update date
May 15, 2019
Contact name
Paul Guilhamon
Organization name
SickKids
Street address
686 Bay Street
City
Toronto
State/province
ON
ZIP/Postal code
M5G0A4
Country
Canada
Platforms (2)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL13534
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (30)
Less...
More...
GSM1429299
genomic DNA from osteosarcoma_T2P
GSM1429300
genomic DNA from osteosarcoma_T2X1
GSM1429301
genomic DNA from osteosarcoma_T2X1X1
GSM1429302
genomic DNA from osteosarcoma_T1P
GSM1429303
genomic DNA from osteosarcoma_T1X1
GSM1429304
genomic DNA from osteosarcoma_T1X2A
GSM1429305
genomic DNA from osteosarcoma_T1X2AX1
GSM1429306
genomic DNA from osteosarcoma_T1X2B
GSM1429307
genomic DNA from osteosarcoma_T1X2BX1
GSM1429308
genomic DNA from colon cancer_T108
GSM1429309
genomic DNA from colon cancer_T109
GSM1429310
genomic DNA from colon cancer_T114
GSM1429311
genomic DNA from colon cancer_T116
GSM1429312
genomic DNA from colon cancer_T118
GSM1429313
genomic DNA from colon cancer_T135
GSM1429314
genomic DNA from colon cancer_X108
GSM1429315
genomic DNA from colon cancer_X109
GSM1429316
genomic DNA from colon cancer_X114
GSM1429317
genomic DNA from colon cancer_X116
GSM1429318
genomic DNA from colon cancer_X118
GSM1429319
genomic DNA from colon cancer_X135
GSM1435552
WT rep1
GSM1435553
WT rep2
GSM1435554
Nrl-KO rep1
GSM1435555
Nrl-KO rep2
GSM1435556
Nrl-KO rep3
GSM1435557
Nrl-KO rep4
GSM1435558
Nrl-KO rep5
GSM1435559
Nrl-KO rep6
GSM1435560
Nrl-KO rep7
This SuperSeries is composed of the following SubSeries:
GSE59134
Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array]
GSE59351
Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [meDIP-seq]
Relations
BioProject
PRJNA255123
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE59352_RAW.tar
1.0 Gb
(http)
(custom)
TAR (of BED)
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