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Sample GSM1429305 Query DataSets for GSM1429305
Status Public on Nov 26, 2014
Title genomic DNA from osteosarcoma_T1X2AX1
Sample type genomic
Source name osteosarcoma
Organism Homo sapiens
Characteristics group: PDX
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified using QiaAMP DNA Mini Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using standard recommended Illumina scanner settings
Description tumour sample
Data processing GenomeStudio software v2011.1
Submission date Jul 07, 2014
Last update date Nov 26, 2014
Contact name Paul Guilhamon
Organization name SickKids
Street address 686 Bay Street
City Toronto
State/province ON
ZIP/Postal code M5G0A4
Country Canada
Platform ID GPL13534
Series (2)
GSE59134 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array]
GSE59352 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE T1X2AX1_DetectionPvalue
cg00050873 0.811461638977039 0
cg00212031 0.253424657534247 0.00192207912031817
cg00213748 0.459893048128342 0.35892476457228
cg00214611 0.28125 7.2545504894439e-06
cg00455876 0.61405529953917 0
cg01707559 0.281057268722467 0
cg02004872 0.0944123314065511 0
cg02011394 0.976597510373444 0
cg02050847 0.825526932084309 0
cg02233190 0.13668499607227 0
cg02494853 0.0160422576543089 0
cg02839557 0.281938325991189 5.48805445532707e-12
cg02842889 0.211576846307385 4.39586700373695e-10
cg03052502 0.969366562824507 0
cg03155755 0.938528720188109 0
cg03244189 0.281452658884565 0
cg03443143 0.834749034749035 0
cg03683899 0.343085106382979 0.000131025604087731
cg03695421 0.670886075949367 0
cg03706273 0.119237861094038 0

Total number of rows: 485512

Table truncated, full table size 14804 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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