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Sample GSM1429300 Query DataSets for GSM1429300
Status Public on Nov 26, 2014
Title genomic DNA from osteosarcoma_T2X1
Sample type genomic
Source name osteosarcoma
Organism Homo sapiens
Characteristics group: PDX
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified using QiaAMP DNA Mini Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using standard recommended Illumina scanner settings
Description tumour sample
Data processing GenomeStudio software v2011.1
Submission date Jul 07, 2014
Last update date Nov 26, 2014
Contact name Paul Guilhamon
Organization name SickKids
Street address 686 Bay Street
City Toronto
State/province ON
ZIP/Postal code M5G0A4
Country Canada
Platform ID GPL13534
Series (2)
GSE59134 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array]
GSE59352 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE T2X1_DetectionPvalue
cg00050873 0.514376996805112 0.00911980566142123
cg00212031 0.597402597402597 0.677777771795054
cg00213748 0.414225941422594 0.147495452745403
cg00214611 0.42713567839196 0.367965965411845
cg00455876 0.279279279279279 0.00330666305855687
cg01707559 0.289808917197452 0
cg02004872 0.104193138500635 0
cg02011394 0.602510460251046 0.147495452745403
cg02050847 0.504424778761062 0.5
cg02233190 0.331168831168831 7.53249474986228e-05
cg02494853 0.0161686613299517 0
cg02839557 0.505154639175258 0.401875101905766
cg02842889 0.502283105022831 0.544752868962945
cg03052502 0.854700854700855 0.868266611881561
cg03155755 0.844221105527638 0.367965965411845
cg03244189 0.339226519337017 0
cg03443143 0.198380566801619 0.117173856875571
cg03683899 0.386831275720165 0.392423469749885
cg03695421 0.358173076923077 0.00113938644036249
cg03706273 0.0139365351629503 0

Total number of rows: 485512

Table truncated, full table size 14856 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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