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Sample GSM1429319 Query DataSets for GSM1429319
Status Public on Nov 26, 2014
Title genomic DNA from colon cancer_X135
Sample type genomic
Source name colon cancer
Organism Homo sapiens
Characteristics group: PDX
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified using QiaAMP DNA Mini Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using standard recommended Illumina scanner settings
Description tumour sample
Data processing GenomeStudio software v2011.1
Submission date Jul 07, 2014
Last update date Nov 26, 2014
Contact name Paul Guilhamon
Organization name SickKids
Street address 686 Bay Street
City Toronto
State/province ON
ZIP/Postal code M5G0A4
Country Canada
Platform ID GPL13534
Series (2)
GSE59134 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array]
GSE59352 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE X135_DetectionPvalue
cg00050873 0.567622950819672 0.0696114219117464
cg00212031 0.041620215533259 0
cg00213748 0.40122199592668 0.0645571026061053
cg00214611 0.578082191780822 0.546466472915313
cg00455876 0.391949152542373 0.101836638237556
cg01707559 0.516819571865443 0.000140685622385228
cg02004872 0.487421383647799 0.443540771149754
cg02011394 0.447236180904523 0.00191077753273605
cg02050847 0.98290857605178 0
cg02233190 0.0174279421622139 0
cg02494853 0.945652173913043 0
cg02839557 0.55328798185941 0.192408414393388
cg02842889 0.0472972972972973 0
cg03052502 0.649202733485194 0.199582498782256
cg03155755 0.874290348742903 0
cg03244189 0.0415282392026578 0
cg03443143 0.385 0.367965965411845
cg03683899 0.0224089635854342 0
cg03695421 0.63481228668942 0.618577099558951
cg03706273 0.966208476517755 0

Total number of rows: 485512

Table truncated, full table size 15127 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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