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Sample GSM1429307 Query DataSets for GSM1429307
Status Public on Nov 26, 2014
Title genomic DNA from osteosarcoma_T1X2BX1
Sample type genomic
Source name osteosarcoma
Organism Homo sapiens
Characteristics group: PDX
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified using QiaAMP DNA Mini Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using standard recommended Illumina scanner settings
Description tumour sample
Data processing GenomeStudio software v2011.1
Submission date Jul 07, 2014
Last update date Nov 26, 2014
Contact name Paul Guilhamon
Organization name SickKids
Street address 686 Bay Street
City Toronto
State/province ON
ZIP/Postal code M5G0A4
Country Canada
Platform ID GPL13534
Series (2)
GSE59134 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array]
GSE59352 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE T1X2BX1_DetectionPvalue
cg00050873 0.562814070351759 0.222660274848087
cg00212031 0.651515151515151 0.664943950679213
cg00213748 0.700729927007299 0.632034034588155
cg00214611 0.180851063829787 0.285020125873059
cg00455876 0.0374531835205993 0.024406408886837
cg01707559 0.444940476190476 0
cg02004872 0.143446852425181 0
cg02011394 0.607843137254902 0.197110285231878
cg02050847 0.34020618556701 0.170273561318546
cg02233190 0.261290322580645 3.7986020995362e-09
cg02494853 0.0194489465153971 0
cg02839557 0.460905349794239 0.0612664517583066
cg02842889 0.535849056603774 0.283711508316546
cg03052502 1 0.966242101261513
cg03155755 0.38860103626943 0.255673732522723
cg03244189 0.407307171853857 2.69784194983913e-14
cg03443143 0.346368715083799 0.341547124541492
cg03683899 0.451162790697674 0.564068000051856
cg03695421 0.36 0.0733034501483799
cg03706273 0.0748631278267079 0

Total number of rows: 485512

Table truncated, full table size 14820 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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