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Sample GSM1429316 Query DataSets for GSM1429316
Status Public on Nov 26, 2014
Title genomic DNA from colon cancer_X114
Sample type genomic
Source name colon cancer
Organism Homo sapiens
Characteristics group: PDX
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified using QiaAMP DNA Mini Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using standard recommended Illumina scanner settings
Description tumour sample
Data processing GenomeStudio software v2011.1
Submission date Jul 07, 2014
Last update date Nov 26, 2014
Contact name Paul Guilhamon
Organization name SickKids
Street address 686 Bay Street
City Toronto
State/province ON
ZIP/Postal code M5G0A4
Country Canada
Platform ID GPL13534
Series (2)
GSE59134 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array]
GSE59352 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE X114_DetectionPvalue
cg00050873 0.572741194486983 1.81115396014064e-08
cg00212031 0.380697050938338 0.155832115597376
cg00213748 0.595078299776286 0.0138990272687092
cg00214611 0.711111111111111 0.0635505372140217
cg00455876 0.331203407880724 0
cg01707559 0.477848101265823 0.461618988559419
cg02004872 0.478827361563518 0.243349519467664
cg02011394 0.708838821490468 9.02118754730896e-06
cg02050847 0.518421052631579 0.0127332930371074
cg02233190 0.309823677581864 0.00476303624486341
cg02494853 0.970996413535007 0
cg02839557 0.426997245179063 0.197344932648534
cg02842889 0.463258785942492 0.205528314223471
cg03052502 0.623674911660777 1.96819570029705e-05
cg03155755 0.573412698412698 0.000918151374876608
cg03244189 0.438931297709924 0.599840405788022
cg03443143 0.548571428571429 0.000277451183420485
cg03683899 0.400749063670412 0.55864901048993
cg03695421 0.709677419354839 0.0789433284975311
cg03706273 0.966648137854364 0

Total number of rows: 485512

Table truncated, full table size 15137 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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