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Sample GSM1429310 Query DataSets for GSM1429310
Status Public on Nov 26, 2014
Title genomic DNA from colon cancer_T114
Sample type genomic
Source name colon cancer
Organism Homo sapiens
Characteristics group: Patient
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified using QiaAMP DNA Mini Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using standard recommended Illumina scanner settings
Description tumour sample
Data processing GenomeStudio software v2011.1
Submission date Jul 07, 2014
Last update date Nov 26, 2014
Contact name Paul Guilhamon
Organization name SickKids
Street address 686 Bay Street
City Toronto
State/province ON
ZIP/Postal code M5G0A4
Country Canada
Platform ID GPL13534
Series (2)
GSE59134 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array]
GSE59352 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE T114_DetectionPvalue
cg00050873 0.416243654822335 0.184240849068929
cg00212031 0.347402597402597 0.621393091403872
cg00213748 0.654596100278552 0.3418186222935
cg00214611 0.625 0.722464814185831
cg00455876 0.269452449567723 1.56963368969087e-07
cg01707559 0.238738738738739 0
cg02004872 0.193321616871705 0
cg02011394 0.569948186528497 0.215668480812101
cg02050847 0.579925650557621 0.924744704235875
cg02233190 0.298850574712644 0.0656839834471417
cg02494853 0.416872068060746 0
cg02839557 0.513824884792627 0.0719533103740758
cg02842889 0.512544802867383 0.896207291372569
cg03052502 0.533557046979866 0.673522373738513
cg03155755 0.342047930283224 0.0349395216835992
cg03244189 0.209327548806941 0
cg03443143 0.598070739549839 0.605260001195904
cg03683899 0.497058823529412 0.570441212431366
cg03695421 0.556338028169014 0.879297847380867
cg03706273 0.594484000327359 0

Total number of rows: 485512

Table truncated, full table size 14771 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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