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Sample GSM1429299 Query DataSets for GSM1429299
Status Public on Nov 26, 2014
Title genomic DNA from osteosarcoma_T2P
Sample type genomic
Source name osteosarcoma
Organism Homo sapiens
Characteristics group: Patient
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified using QiaAMP DNA Mini Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using standard recommended Illumina scanner settings
Description tumour sample
Data processing GenomeStudio software v2011.1
Submission date Jul 07, 2014
Last update date Nov 26, 2014
Contact name Paul Guilhamon
Organization name SickKids
Street address 686 Bay Street
City Toronto
State/province ON
ZIP/Postal code M5G0A4
Country Canada
Platform ID GPL13534
Series (2)
GSE59134 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array]
GSE59352 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE T2P_DetectionPvalue
cg00050873 0.766990291262136 3.84018594701274e-09
cg00212031 0.416058394160584 0.508408217454647
cg00213748 0.365384615384615 0.763203856601758
cg00214611 0.714285714285714 0.989790600837051
cg00455876 0.551282051282051 0.000122445946707517
cg01707559 0.265723270440252 0
cg02004872 0.19634703196347 0
cg02011394 0.815340909090909 3.23135811541864e-06
cg02050847 0.387931034482759 0.204862520690933
cg02233190 0.287323943661972 0.000877346811691715
cg02494853 0.0187434254566319 0
cg02839557 0.578947368421053 0.956117286748696
cg02842889 0.605442176870748 0.778806912365174
cg03052502 0.68978102189781 0.00207462882028153
cg03155755 0.897959183673469 0.110756561677941
cg03244189 0.369781312127237 1.79784820364404e-09
cg03443143 0.604938271604938 9.12706465960866e-09
cg03683899 0.565656565656566 0.425689761926541
cg03695421 0.235119047619048 0.0027779044431504
cg03706273 0.00896125205099079 0

Total number of rows: 485512

Table truncated, full table size 14780 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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