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Series GSE59134 Query DataSets for GSE59134
Status Public on Nov 26, 2014
Title Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array]
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Illumina Infinium 450k Human DNA Methylation BeadChip was used to obtain DNA methylation profiles across approximately 450,000 CpGs in Osteosarcoma and Colon Cancer PDXs
 
Overall design Bisulphite converted DNA from each sample was hybridised to the Illumina Infinium 450k Human Methylation BeadChip.
 
Contributor(s) Guilhamon P
Citation(s) 25587359
Submission date Jul 07, 2014
Last update date Mar 22, 2019
Contact name Paul Guilhamon
Organization name SickKids
Street address 686 Bay Street
City Toronto
State/province ON
ZIP/Postal code M5G0A4
Country Canada
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (21)
GSM1429299 genomic DNA from osteosarcoma_T2P
GSM1429300 genomic DNA from osteosarcoma_T2X1
GSM1429301 genomic DNA from osteosarcoma_T2X1X1
This SubSeries is part of SuperSeries:
GSE59352 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics
Relations
BioProject PRJNA254478

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE59134_Matrix_Signal_Intensities_PG_0714.txt.gz 50.1 Mb (ftp)(http) TXT
GSE59134_RAW.tar 183.1 Mb (http)(custom) TAR
Processed data included within Sample table
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