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Sample GSM1429306 Query DataSets for GSM1429306
Status Public on Nov 26, 2014
Title genomic DNA from osteosarcoma_T1X2B
Sample type genomic
Source name osteosarcoma
Organism Homo sapiens
Characteristics group: PDX
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified using QiaAMP DNA Mini Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using standard recommended Illumina scanner settings
Description tumour sample
Data processing GenomeStudio software v2011.1
Submission date Jul 07, 2014
Last update date Nov 26, 2014
Contact name Paul Guilhamon
Organization name SickKids
Street address 686 Bay Street
City Toronto
State/province ON
ZIP/Postal code M5G0A4
Country Canada
Platform ID GPL13534
Series (2)
GSE59134 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array]
GSE59352 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE T1X2B_DetectionPvalue
cg00050873 0.49685534591195 0.000160778633878422
cg00212031 0.171717171717172 0.907662683117195
cg00213748 0.354166666666667 0.623528951655608
cg00214611 0.586666666666667 0.571370410466136
cg00455876 0.151162790697674 0.0122784527030116
cg01707559 0.292346298619824 0
cg02004872 0.197849462365591 0
cg02011394 0.738532110091743 2.04857353303112e-10
cg02050847 0.393700787401575 0.326477626261487
cg02233190 0.275334608030593 9.22899854316483e-07
cg02494853 0.0186634066829666 0
cg02839557 0.734375 0.750000320725593
cg02842889 0.54040404040404 0.673522373738513
cg03052502 0.786206896551724 0.614963468944779
cg03155755 0.550847457627119 5.248524643231e-06
cg03244189 0.430062630480167 2.42226140085844e-05
cg03443143 0.743859649122807 0.00214951038347766
cg03683899 0.355263157894737 0.88265980373306
cg03695421 0.47877358490566 0.000737030761165269
cg03706273 0.233511586452763 0

Total number of rows: 485512

Table truncated, full table size 14816 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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