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Sample GSM1429301 Query DataSets for GSM1429301
Status Public on Nov 26, 2014
Title genomic DNA from osteosarcoma_T2X1X1
Sample type genomic
Source name osteosarcoma
Organism Homo sapiens
Characteristics group: PDX
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified using QiaAMP DNA Mini Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using standard recommended Illumina scanner settings
Description tumour sample
Data processing GenomeStudio software v2011.1
Submission date Jul 07, 2014
Last update date Nov 26, 2014
Contact name Paul Guilhamon
Organization name SickKids
Street address 686 Bay Street
City Toronto
State/province ON
ZIP/Postal code M5G0A4
Country Canada
Platform ID GPL13534
Series (2)
GSE59134 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array]
GSE59352 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE T2X1X1_DetectionPvalue
cg00050873 0.537037037037037 0.0712854308937997
cg00212031 0.353488372093023 0.254682133051394
cg00213748 0.405660377358491 0.269000263913023
cg00214611 0.398989898989899 0.340697748976685
cg00455876 0.18970189701897 0.00176195464166728
cg01707559 0.254007398273736 0
cg02004872 0.0884691848906561 0
cg02011394 0.651376146788991 0.240773545653337
cg02050847 0.452205882352941 0.458676806549341
cg02233190 0.317808219178082 7.49487027995599e-10
cg02494853 0.0189709898870599 0
cg02839557 0.489690721649485 0.362453546308571
cg02842889 0.653846153846154 0.856249570701676
cg03052502 0.510204081632653 0.135728551939982
cg03155755 0.831896551724138 0.181649663314291
cg03244189 0.468181818181818 1.39946297772475e-07
cg03443143 0.642384105960265 0.609721794694863
cg03683899 0.261224489795918 0.597332485022055
cg03695421 0.298126064735945 1.39707733400884e-05
cg03706273 0.0193017314788533 0

Total number of rows: 485512

Table truncated, full table size 14855 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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