|
Status |
Public on Nov 26, 2014 |
Title |
genomic DNA from colon cancer_T109 |
Sample type |
genomic |
|
|
Source name |
colon cancer
|
Organism |
Homo sapiens |
Characteristics |
group: Patient
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified using QiaAMP DNA Mini Kit according to standard instructions
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using standard recommended Illumina scanner settings
|
Description |
tumour sample
|
Data processing |
GenomeStudio software v2011.1
|
|
|
Submission date |
Jul 07, 2014 |
Last update date |
Nov 26, 2014 |
Contact name |
Paul Guilhamon |
Organization name |
SickKids
|
Street address |
686 Bay Street
|
City |
Toronto |
State/province |
ON |
ZIP/Postal code |
M5G0A4 |
Country |
Canada |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE59134 |
Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array] |
GSE59352 |
Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics |
|