GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1429318 Query DataSets for GSM1429318
Status Public on Nov 26, 2014
Title genomic DNA from colon cancer_X118
Sample type genomic
Source name colon cancer
Organism Homo sapiens
Characteristics group: PDX
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified using QiaAMP DNA Mini Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using standard recommended Illumina scanner settings
Description tumour sample
Data processing GenomeStudio software v2011.1
Submission date Jul 07, 2014
Last update date Nov 26, 2014
Contact name Paul Guilhamon
Organization name SickKids
Street address 686 Bay Street
City Toronto
State/province ON
ZIP/Postal code M5G0A4
Country Canada
Platform ID GPL13534
Series (2)
GSE59134 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array]
GSE59352 Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE X118_DetectionPvalue
cg00050873 0.547038327526132 0.00504022523972703
cg00212031 0.455855855855856 0.00975248897231606
cg00213748 0.524812030075188 0.000103752828282677
cg00214611 0.436619718309859 0.234393824242789
cg00455876 0.296171171171171 4.14901446532667e-11
cg01707559 0.607476635514019 0.22679777895312
cg02004872 0.462871287128713 0.181649663314291
cg02011394 0.635897435897436 0.00335956237091672
cg02050847 0.549222797927461 0.259410108386856
cg02233190 0.318713450292398 0.5
cg02494853 0.893253968253968 0
cg02839557 0.663072776280323 0.485054448679
cg02842889 0.4609375 0.269000263913023
cg03052502 0.333853354134165 0.000324903128397946
cg03155755 0.609638554216868 0.278582789277308
cg03244189 0.577726218097448 0.0959476171975608
cg03443143 0.377380952380952 1.86718995820456e-09
cg03683899 0.406698564593301 0.132558949472377
cg03695421 0.655889145496536 0.0910497196811595
cg03706273 0.94746835443038 0

Total number of rows: 485512

Table truncated, full table size 15541 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap