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Varki A, Cummings RD, Esko JD, et al., editors. Essentials of Glycobiology [Internet]. 3rd edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 2015-2017. doi: 10.1101/glycobiology.3e.015

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Essentials of Glycobiology [Internet]. 3rd edition.

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Chapter 15Sialic Acids and Other Nonulosonic Acids

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Published online: 2017.

Sialic acids are abundant on vertebrate glycoproteins and have diverse functional roles. Originally discovered within the Deuterostome lineage of animals and associated microbes, they are actually a subset of a more ancient family of 9-carbon backbone monosaccharides called nonulosonic acids, which are also found in some Eubacteria and Archaea. All nonulosonic acids share unusual biosynthetic pathways and are remarkable for the number of molecular components carried on one monosaccharide, including a carboxylic acid, a 3-carbon exocyclic side chain, and often one or more acylated amino groups. Further complexity arising from various modifications, as well as diverse linkages at terminal positions of glycans, makes them well suited to carry information for glycan–protein, cell–cell, and pathogen–cell recognition. Given their high density and location on vertebrate cells, sialic acids also exert many functions via electronegative charge, such as repulsion of cell–cell interactions, protein stabilization, ion binding, and ion transport. They are among the most rapidly evolving classes of glycans in nature.

DISCOVERY AND GENERAL CLASSIFICATION

The nomenclature of these molecules is tied to their discovery, being first isolated by Gunnar Blix from salivary mucins in 1936 and independently by Ernst Klenk from brain glycolipids in 1941. Blix named his substance “sialic acid” after the Greek word for saliva (σίαλον), and Klenk named his “neuraminic acid” for neurons in the brain. By the time the relationship of these substances became evident, both names were already in use, and they have persisted. Although 5-N-acetylneuraminic acid (Neu5Ac) is the most common sialic acid (Sia) in humans, the Sia family is comprised of related structures (Figure 15.1) that vary at the C-5 carbon, including 5-N-glycolylneuraminic acid (Neu5Gc) and 2-keto-deoxynonulosonic acid (Kdn), with a hydroxyl group at C-5. Neuraminic acid (Neu) with a free amino group can also exist in nature, only in glycosidic linkage.

FIGURE 15.1.. Sialic acids (Sias) and other nonulosonic acids (NulOs).

FIGURE 15.1.

Sialic acids (Sias) and other nonulosonic acids (NulOs). As shown in the figure, Sias are a subset of NulOs. All NulOs carry a negatively charged carboxylate (C-1) and a 3-carbon exocyclic side-chain (C-7 to C-9). The bond at the anomeric center (C-2) (more...)

In the 1980s, similar 9-carbon backbone 2-keto acid sugars were discovered in some bacterial lipopolysaccharides (LPSs) and reported as “bacterial sialic acids.” The resulting confusion was resolved in 2009 by suggesting that the term “sialic acid” be limited to its original use in describing neuraminic acid, deoxynonulosonic acid, and their derivatives in deuterostomes and their pathogens, and that the term “nonulosonic acid” (NulO) encompasses the entire group of 9-carbon non-2-ulosonic acids (Figure 15.1).

A well-characterized microbial NulO is legionaminic acid (Leg), in the LPS of Legionella pneumophila. Like Neu5Ac, it has a D-glycero-D-galacto conformation, but with an N-acetyl group instead of a hydroxyl at C-7 and no hydroxyl at C-9. Pseudomonas species express pseudaminic acid (Pse), which has the same structure as Leg but in a different stereochemical configuration (Figure 15.1). Later discoveries of NulOs such as 4epi-Leg (4eLeg), 8epi-Leg (8eLeg), and acinetaminic acid (Aci) (Figure 15.1) indicate that such molecules are widespread in nature. Biosynthesis of all NulOs proceeds through similar enzymatic mechanisms, originating by condensation of a 6-carbon monosaccharide with 3-carbon pyruvate, and then being activated to a CMP-sugar, before transfer to glycan acceptors. Genetic evidence suggests that NulOs likely arose from homologous gene products that synthesize keto-deoxyoctulosonic acid (Kdo), a related 8-carbon α-keto sugar acid that is also unusual in being activated as a CMP-sugar (Chapter 21). Thus, NulOs appear to be an ancient invention by the common ancestor of life-forms, but then persisted only in some taxa, eventually becoming prominent as Sias when the Deuterostome lineage of animals emerged, at the Cambrian Explosion ∼530 million years ago. Gene sequence homologies indicate that certain microbes then modified the ancient genes of the NulO biosynthetic pathway, reinventing vertebrate-like Sias by convergent evolution, evidently to evade the vertebrate immune system via molecular mimicry. The rest of this chapter focuses mostly on traditional Sias in Deuterostomes and their pathogens, and the prokaryotic NulOs are again mentioned in chapters on Eubacteria (Chapter 21) and Archaea (Chapter 22).

ABBREVIATED NAMES OF NONULOSONIC ACIDS

Complete chemical names of NulOs are rather cumbersome for routine use. Beyond the eight currently known core units (Figure 15.1), additional substitutions are designated by letter codes (Ac = acetyl, Gc = glycolyl, Me = methyl, Lt = lactyl, and S = sulfate), and these are listed along with numbers indicating their location relative to the carbons (e.g., 9-O-acetyl-8-O-methyl-N-acetylneuraminic acid is Neu5,9Ac28Me). If one is uncertain of the exact type of molecule present, the generic abbreviations Sia or NulO should be used. Partial structural information can also be incorporated. For example, a Sia of otherwise unknown type with an acetyl substitution at the C-9 position could be written as Sia9Ac. With regard to the bacterial NulOs, the names Leg, Pse, 4eLeg, 8eLeg, and Aci are often used synonymously with the 5,7-di-N-acetylated forms of these molecules (Figure 15.1). Ideally, the former terms could be reserved for the free amino forms of these molecules (as with Neu).

THE SIALIC ACID FAMILY

The most common Sia in humans is Neu5Ac, a relatively strong acid (pKa of 2.6) because the C-1 carboxylate is attached to the C-2 anomeric carbon. The exocyclic glycerol-like side chain (C-7, C-8, and C-9, each carrying a hydroxyl group) provides opportunities for hydrogen bonding. The N-acetyl group facilitates hydrophobic interactions, changing to hydrophilic properties with an N-glycolyl group. Each of these moieties can participate in binding specificities and functions of Sia-containing glycans.

Many publications assume that Neu5Ac (sometimes called NANA) is the Sia present in a given biological sample, and it is indeed common in vertebrates. But a second level of diversity arises from various natural modifications, some of which are also common. The four “core” Sia molecules (Neu5Ac, Neu5Gc, Kdn, and Neu) sometimes carry one or more additional substitutions on the hydroxyl groups at C-4, C-7, C-8, and C-9. These include O-acetyl, O-methyl, O-sulfate, or O-lactyl groups. The carboxylate group at C-1 can condense with hydroxyl groups of adjacent sugars to form an uncharged lactone or with a free amino group at C-5 to form an uncharged lactam. Such modifications can determine or modify recognition by Sia-binding proteins and direct Sia function. Despite this complexity, it may be sufficient in some biological studies to simply know that a generic Sia residue is present at the terminal position of a glycan under study. Dehydro Sias also exist in nature. For example, Neu2en5Ac (2-deoxy-2,3-di-dehydro-N-acetylneuraminic acid, sometimes called DANA) has natural inhibitory properties toward sialidases and was the starting point for synthesis of more potent inhibitors such as the anti-influenza drug Relenza (Chapter 57).

SIALOGLYCAN DIVERSITY

Diversity also results from different ways that Sias are linked to underlying glycan chains (Figure 15.2) via their C-2 anomeric carbon in α-configuration, commonly to the C-3 or C-6 positions of galactose, to the C-6 position of N-acetylgalactosamine, or to the C-8 or C-9 position of another sialic acid. Sialyltransferases (STs) generate each of these linkage types. There are 20 known genes in mice and humans encoding STs synthesizing these four major linkages, with relative or absolute specificities for other details of the underlying glycan. Differential ST gene expression thus generates different sets of sialoglycans varying in their underlying glycan structures. STs mostly function in the trans-Golgi and use the nucleotide sugar CMP-Sia as a donor (Chapters 4 and 5). Fascinating exceptions discussed below are the trans-sialidases of certain pathogens, which can directly “steal” sialic acids from termini of host glycans and transfer them to their own surface glycans, as a cloaking mechanism.

FIGURE 15.2.. Diversity in sialic acid linkages.

FIGURE 15.2.

Diversity in sialic acid linkages. Sialic acids in vertebrates are commonly (but not exclusively) found in α-glycosidic linkage to the C-3 or C-6 hydroxyl of galactose, the C-6 hydroxyl of N-acetylgalactosamine, or the C-8 hydroxyl of another (more...)

The sum total of the diversity of sialoglycans in a cell or organism is dubbed its “sialome.” As mentioned, Sias are often found as the terminal (outermost) saccharide on branches of N-glycans, O-glycans, and glycosphingolipids (Figure 15.3) and occasionally capping side chains of GPI anchors (Chapter 12). A useful conceptualization of the sialome is as a “forest canopy” of the cell-surface glycan “forest” (the whole glycome). At the outermost level are different Sia structures (leaves and flowers), which are in glycosidic linkage to underlying linear and branched oligosaccharides (stems and branches), which in turn are components of glycoproteins and glycolipids (the trees). At the cell surface, glycolipids and glycoproteins organize into lateral domains (forests). Just as the forest varies greatly from place to place, the sialome varies among cell types and among domains on a given cell surface, variations that serve specific functions. As with the glycome, each cell type in each species expresses its own distinct sialome. For example, although mammalian liver sialoglycans are most abundant on glycoproteins, brain sialoglycans are much more abundant as sialoglycolipids (Chapter 11), so much so that they are termed “gangliosides” for the nerve ganglia on which they were discovered. The sialome not only differs among species and cell types but also varies markedly with regard to time, space, and environmental cues.

In vertebrates, the terminal Sia of a glycan chain is rarely extended further, except with another Sia (Figure 15.3). However, Sias can occur as an internal glycan component in repeating units of some bacterial polysaccharides and in some invertebrates such as echinoderms. In the latter, the C-4 hydroxyl is sometimes glycosylated with other monosaccharides such as fucose and galactose. Overall, it appears that we do not yet know the full extent of sialoglycan diversity in nature.

FIGURE 15.3.. Hierarchical levels of sialome complexity.

FIGURE 15.3.

Hierarchical levels of sialome complexity. The sialome can be analyzed at the following complexity levels: (A) sialic acid core and core modifications: esterification (with various groups), O-methylation, lactonization, or lactamization yielding >50 (more...)

POLYSIALIC ACIDS

Polysialic acid (polySia, previously called PSA) is a linear homopolymer of Sias that sometimes reaches lengths of more than 100 residues. Shorter chains, often two to three residues, called oligosialic acid, are common components of gangliosides (Figure 15.3 and Chapter 11) and are found occasionally as terminal structures on glycoprotein glycans. PolySia is a prominent structural feature of a highly select group of acceptor proteins, the best studied of which is the neural cell adhesion molecule (NCAM). Beginning early in vertebrate brain development, long polySia chains (Neu5Acα2-8)n are added to NCAM (often then called PSA-NCAM), on the termini of two specific N-glycans. The large hydration shell formed by polySia markedly increases the hydrodynamic volume of its protein carrier and interferes with NCAM's natural cell–cell adhesion function. PolySia thus converts an adhesive protein into a repelling one. During brain development, a high level of polySia ensures that neural precursors can migrate to their final anatomical sites. Once a destination is reached, polySia is down-regulated and firm adhesion proceeds, keeping the cells in place. When the sialyltransferases responsible for polySia formation are genetically ablated in mice, some nerve progenitor cells adhere prematurely, become stuck in place and fail to reach their proper destination. Of interest, human genetic and molecular evidence indicates that variations in polysialylation may be a factor in human neurological diseases like schizophrenia.

PolySia is found less abundantly on a few other proteins, including another cell adhesion molecule (SynCAM 1), a peptide receptor (neuropilin-2), and on O-glycans of fish egg glycoproteins. It is also a key component of the capsular polysaccharides of certain pathogenic bacteria, in which it is called colominic acid (e.g., from K1 Escherichia coli). The linkages between Sia units in polySia chains vary in bacteria, including α2-8, α2-9, and alternating α2-8/α2-9. The α2-8 polymer in E. coli can also be O-acetylated at Sia C-7 or C-9. A bacteriophage that attacks polySia-expressing bacteria produces a highly specific endosialidase that only clips chains that are ≥8 residues long. This enzyme (Endo-N) and its inactivated form (which binds polySia) are powerful tools to study polySia functions.

EVOLUTIONARY DISTRIBUTION OF SIALIC ACIDS

Early studies suggested species specificity in the occurrence of specific Sia types. With analytical improvements, it is evident that Sia variations are more widely expressed across species but occur at differing levels. Sias became prominent late in evolution, primarily in the deuterostome lineage (Chapter 27), which comprises vertebrates and some “higher” invertebrates (such as echinoderms). Indeed, with exceptions, Sias are not generally reported in plants or invertebrates. This may change as molecular techniques improve. For example, insects were believed to be free of Sias until their discovery in cicada Malpighian tubules and Drosophila brains, and later identification of a single Drosophila gene (DsiaT) with sequence similarities to mammalian sialyltransferases. When DsiaT is inactivated, flies suffer locomotor abnormalities and defects in neuromuscular junctions. Although of very low abundance, Sias are both present and crucial to the survival of Drosophila. Sialic acids have also been reported in the nervous systems of behaviorally complex protostomes like octopus and squid. On the other hand, no Sias or ST genes were found in the well-studied round worm, Caenorhabditis elegans (Chapter 25). Evidently, Sias were invented in the common ancestor of protostomes and deuterostomes, and then they became essential in deuterostomes, but were partially or completely discarded in some protostome lineages.

Meanwhile, some pathogenic and commensal bacteria express large amounts of Sias in their capsular polysaccharides and/or lipooligosaccharides, protecting them from complement activation and/or antibody recognition of the underlying glycans, also sometimes engaging the Siglec family of receptors (Chapter 35) to dampen innate immune cell reactivity. Essentially, all bacterial enzymes involved in synthesizing and metabolizing Sias have evolved independently, apparently being “reinvented” from the more ancient prokaryotic NulO pathway. Yet, other microbes “steal” Sias from their host using various mechanisms to achieve “molecular mimicry.” Neisseria gonorrheae even has a remarkably efficient surface ST that can scavenge trace amounts of CMP-Neu5Ac from body fluids of its exclusive host, humans.

Interestingly, there is wide variation in Sia expression and complexity within deuterostomes, with the sialome of echinoderms appearing very complex and that of humans being among the simplest. Although expression of Neu5Gc and 9-O-acetylated Sias is very common in deuterostomes, exceptions exist, such as lack of Neu5Gc biosynthesis in humans, New World monkeys, Sauropsids (birds and reptiles, the descendants of dinosaurs), the Pinnipedia and Musteloidia members of the Carnivora, and likely in the Monotreme lineage.

HUMAN EVOLUTIONARY LOSS OF N-GLYCOLYLNEURAMINIC ACID

Although Neu5Gc is common in mammals including human's closest evolutionary relatives (bonobos and chimpanzees), it is not synthesized by our species, because of a single-exon deletion mutation in the CMAH gene encoding the hydroxylase enzyme that converts CMP-Neu5Ac to CMP-Neu5Gc. Why did the human lineage lose Neu5Gc? Many pathogens depend on Sias to bind and infect vertebrates (Chapter 42), and some specifically target Neu5Gc. Taken together, existing data suggest that a potent malaria organism recognizing Neu5Gc may have been the cause of initial selection of the CMAH null state. Subsequent natural development of anti-Neu5Gc antibodies in CMAH-null females may have then reduced fertility with CMAH positive males by killing their sperm, possibly serving to speciate the null population. Other lineage-specific losses of Neu5Gc expression mentioned earlier may have occurred in a similar fashion. This is part of a broader consideration of Sias as both a pathogen target and a physiological regulator, a combination that apparently contributed to rapid evolution of both Sia expression patterns and Sia-binding proteins, especially of the I-type lectin family (Chapter 35).

Despite CMAH inactivation in humans, traces of Neu5Gc are found in normal human tissues. This, as well as the presence of Neu5Gc in human tumor cells and tissues, represents metabolic incorporation of Neu5Gc ingested from foods, particularly “red meats.” Most healthy humans have circulating anti-Neu5Gc antibodies, raising the possibility that their interaction with metabolically incorporated Neu5Gc contributes to inflammation in diseases that correlate with red meat consumption, such as atherosclerosis and epithelial cancers, pathologies uncommon in Neu5Gc-positive primates. Other possible consequences of human Neu5Gc loss include resistance to some Neu5Gc-binding animal pathogens such as E. coli K99, and the emergence of Neu5Ac-preferring exclusive human pathogens such as the malarial parasite Plasmodium falciparum and the toxin from Salmonella typhi.

An unexplained observation is the consistent scarcity of Neu5Gc in the brains of all vertebrates studied to date, including those that have high Neu5Gc levels in other tissues. The evolutionary advantage of excluding Neu5Gc from this vital organ is unknown, but may relate to selection pressure by unknown pathogens and/or selective roles of Neu5Ac in optimal brain development and function.

METABOLISM

Synthesis of Sialoglycans

The metabolic pathways of Neu5Ac in vertebrates are shown in Figure 15.4. Neu5Ac is derived by condensation of ManNAc-6-P with phosphoenolpyruvate. The ManNAc-6-P is produced by a bifunctional enzyme, glucosamine UDP-GlcNAc-2-epimerase/N-acetylmannosamine kinase, coded by the GNE gene. The enzyme converts UDP-GlcNAc to ManNAc-6-P and UDP in two steps. Missense mutations in this gene cause hereditary inclusion body myopathy (HIBM) in humans (Chapter 45), and gene inactivation causes embryonic lethality in mice. Condensation of ManNAc-6-P with phosphoenolpyruvate (PEP) yields Neu5Ac-9-P, which is then dephosphorylated by a specific phosphatase to release free Neu5Ac in the cytoplasm. The same pathway can use Man-6-P instead of ManNAc-6-P to generate Kdn. In contrast, Neu5Ac biosynthesis in prokaryotes involves direct condensation of ManNAc with phosphoenolpyruvate. Notably, synthetic unnatural mannosamine derivatives can enter the Sia biosynthetic pathway, allowing chemical engineering of modified cell-surface sialic acids (Chapter 56).

FIGURE 15.4.. Metabolism of N-acetylneuraminic acid in vertebrate cells.

FIGURE 15.4.

Metabolism of N-acetylneuraminic acid in vertebrate cells. The schematic (left) represents the pathways and compartments of biosynthesis of Neu5Ac in vertebrates: biosynthesized in the cytosolic compartment, converted to activated CMP-Neu5Ac in the nucleus, (more...)

Free Sias are converted to the donor CMP-Sia (as the β-anomer) by condensation with CTP, a reaction that occurs in the nuclear compartment, for unknown reasons. The CMP-Sia products then return to the cytosol, whence they are transported into Golgi compartments by a CMP antiporter, which concentrates them in the Golgi lumen (Chapter 5). In contrast, prokaryotic CMP-Sias are synthesized in the cytoplasm and used without compartmentalization. In eukaryotes, increasing cytosolic CMP-Sia levels feedback to inhibit GNE. In a human disease called sialuria different mutations of GNE result in failed feedback regulation and overproduction of sialic acid.

The linkage-specific STs mentioned earlier are type II membrane proteins in animals, with signals leading to their Golgi localization. Animal STs share similar amino acid sequence motifs (sialylmotifs) that include shared sites for CMP-Sia recognition (Chapters 6 and 8). In contrast, prokaryotic STs emerged independently by convergent evolution, they do not have sialylmotifs, and some do not even share homology. In addition to the Sia linkage, several eukaryotic STs show strong preferences for glycolipids versus glycoproteins and/or the terminal saccharide and sequence. Modified Sias, such as Neu5Gc, O-acetylated species, and unnatural synthetic sialic acids can be donors for STs after conversion to their activated CMP-Sia forms. Some mammalian STs transfer both Neu5Ac and Kdn, but others transfer only one or the other. All result in α-anomeric linkages. As mentioned earlier, “trans-sialidases” of some pathogenic trypanosome species and some bacteria transfer Sias from one glycosidic linkage to another (Chapter 43). Although trans-sialidases tend to be specific regarding the glycosidic linkage they generate, they can be promiscuous with regard to the donor and acceptor glycans.

Modifications of Sialic Acids

Once CMP-Neu5Ac is converted to Neu5Gc in the cytosol, there is no known way to reverse the reaction, perhaps explaining the accumulation of dietary Neu5Gc in human tissues. Further chemical diversity in Sias is generated by enzymatic modification of Neu5Ac, Neu5Gc, and Kdn via reactions that occur mostly in the lumen of the Golgi and related organelles, and on mature sialoglycoconjugates, as well as at the CMP-Sia level. Different enzymes likely O-acetylate Sia at C-7/9 (most common) and C-4 (less common). Multiple O-acetyltransferases (many likely yet to be discovered) appear to have specificity for Sias of different glycosidic linkages or carried on different classes of mature glycoconjugates, or as CMP-Neu5Ac. For example, a human O-acetyltransferase (CASD1) acetylates CMP-Neu5Ac which is then transferred to proteins, and the E. coli K1 NeuO enzyme O-acetylates polySia. O-Acetyl groups found at Sia C-9 appear to be initially added to C-7, followed by nonenzymatic migration to C-9 under physiological conditions. Other substitutions of the hydroxyl groups arise from use of appropriate donors (S-adenosylmethionine for methylated Sias or 3′-phosphoadenosine 5′-phosphosulfate for sulfated Sias). With the exception of Neu5Gc, other modified Sias do not appear to be very effective substrates for reactivation by CMP-Sia synthases, so their catabolism involves reversal enzymes like Sia O-acetylesterases.

Release of Sialic Acids

Sialic acids are removed from glycoconjugates by sialidases, which are also historically called “neuraminidases.” The term “sialidase” is preferred, although viral sialidases are still called neuraminidases because of the use of “N” in their strain designation (e.g., H1N1 influenza), where N1 refers to its neuraminidase/sialidase. In eukaryotes, sialidases are encoded by NEU genes, of which there are four in the human genome. Although Neu-1 and Neu-4 are thought to act primarily intracellularly in endosomal/lysosomal compartments to recycle sialoglycans, Neu-1 can also be recruited to the cell surface where it may regulate sialylation and modulate receptor-mediated signaling. In contrast, Neu-3 appears primarily on the cell-surface and has a preference for gangliosides, whereas Neu-2 exists in the cytosol, presumably to recycle sialoglycans that enter that compartment following autophagy or phagocytosis.

Many microorganisms, including many pathogens, express sialidases. Unlike the case with STs, bacterial, fungal, and invertebrate sialidases are evolutionarily related to their vertebrate counterparts. In contrast, viral sialidases that are essential for their virulence represent distinct families. The 3D structures of pathogen sialidases are a focus for drug development (Chapter 42). Sialidases vary in their substrate specificity from highly selective (e.g., the α2-3-specific sialidase from Streptococcus pneumoniae) to broadly acting (e.g., the α2-3, α2-6, α2-8 sialidase from Arthrobacter ureafaciens). Interestingly, some pathogen sialidases have additional lectin (sugar-binding) domains that appear to direct the action of the enzymes to particular sites of action.

Some Sia linkages resist release even by sialidases with broad specificity. A branched α2-3Sia on the brain ganglioside GM2 requires a special helper protein (GM2-activator) to facilitate its cleavage, and mutation of GM2-activator protein results in devastating GM2 buildup in the brain (Chapter 44). O-Methylation and O-acetylation of Sias also can hinder or even prevent hydrolysis by sialidases, as is the case for 4-O-acetyl groups. These properties are likely biologically significant, but have not been well investigated.

Microbial sialidases and trans-sialidases (see also Chapter 43) are powerful virulence factors that may assist invasion, unmask potential binding sites, modulate the immune system, and, in addition, provide nutrients for some bacteria. Viral neuraminidases facilitate release and spreading of newly formed viruses, and specific viral sialidase inhibitors are widely used as the antiviral drugs Relenza and Tamiflu (Chapter 42).

Sialic Acid Recycling and Degradation

Once a Sia molecule is released in the lysosome of a vertebrate cell, it is returned to the cytosol by a specific exporter (Sialin), where it is either reused or degraded. Human mutations in Sialin cause Salla disease and infantile sialic acid storage disease, resulting in accumulation of Sia in lysosomes and excretion of excess Sia in the urine. Some pathogens scavenge Sias from the extracellular space, using high-efficiency transporters to concentrate them from trace levels. In contrast, there is no evidence for plasma membrane Sia transporters in eukaryotic cells. Nevertheless, free Sias can be taken up into mammalian cells via fluid-phase macropinocytosis, eventually arriving in the lysosomes, from where they are exported into the cytoplasm by Sialin. Intact sialoglycans can also be taken up and transported to lysosomes, where sialidases release Sias for delivery to the cytoplasm and reuse by the cellular CMP-Sia synthase. However, at the whole-body level, free Sias in the bloodstream derived from cellular sources or digestive processes, are rapidly excreted in the urine. Thus, uptake of sialoglycoproteins (followed by lysosomal release by Neu-1 and export by Sialin) may better account for the incorporation of dietary Neu5Gc in human tissues.

O-Acetylated Sias are de-O-acetylated by Sia-specific O-acetylesterases, including the human enzyme coded by the SIAE gene, which may regulate B-cell development and immune tolerance, by modulating recognition by Siglec receptors (Chapter 35). Enzymes with sialic acid 9-O-acetylesterase activity are also found in some bacteria and viruses. Influenza C virus and some coronavirus hemagglutinins bind specifically to 9-O-acetyl sialic acid for host infection, and their O-acetylesterases help in their further dissemination after newly budded virions are released from host cells. Notably, all known O-acetylesterases specific for esters at C-9 are incapable of releasing O-acetyl esters from C-7. However, 7-O-acetyl groups can migrate to C-9 under physiological conditions and thus become substrates for these enzymes. This process can even result in stepwise deesterification of 7/8/9-tri-acetyl Sias, which do exist in nature. Different vertebrate and viral esterases are specific for 4-O-acetyl groups, but relatively little is known about them.

If not reused or excreted, Sias are degraded by a cytosolic Sia-specific pyruvate lyase (encoded by NPL) that cleaves the molecule into an N-acyl-mannosamine and pyruvate. Such N-acyl-mannosamines may either reenter the Sia biosynthetic pathway after phosphorylation by kinases, or be further metabolized via conversion to N-acyl-glucosamines and their corresponding phosphates, with eventual deacylation, (Figure 15.4). Sia-specific pyruvate lyases also exist in various microorganisms, allowing the use of host Sias as a nutrient source.

METHODS FOR STUDYING SIALIC ACIDS

Sialic acids are amenable to analysis as components of isolated glycans, as released monosaccharides, and also in situ on cell surfaces. Among animal monosaccharides, Sias have a distinct molecular mass that makes them readily identifiable by mass spectrometry (MS), currently among the most sensitive methods for glycan analysis (Chapters 50 and 51). The glycerol-like side chain of Sias (C-7, C-8, and C-9) is uniquely sensitive to periodate oxidation under very mild conditions, providing a method to selectively generate aldehyde groups only on sialoglycans (remarkably, this chemical reaction can even show this specificity when applied to some intact cell surfaces). Subsequent addition of a tagged nucleophile (e.g., biotin hydrazide) results in a tag (e.g., biotin) covalently bound to every Sia that was originally cleaved by periodate. Selective release of most Sias from intact cells or isolated sialoglycans is accomplished using microbial sialidases. Use of α2-3 or α2-8-specific sialidases can provide some insight on Sia linkages as well. Sia glycosides are also more susceptible to acid hydrolysis than most other sugars, being released using 0.1 m HCl, or even with weak acids like 2 m acetic acid or propionic acid at 80°C (albeit still with some loss or migration of labile modifications). This allows selective release of Sias from complex glycans for subsequent analysis by chromatographic methods. Free Sias react with 1,2-diamino-4,5-methylenedioxybenzene (DMB) to generate fluorescent compounds amenable to qualitative and quantitative high-pressure liquid chromatography. There are still some major limitations to methods available for Sia analysis. For example, some mass spectrometric methods result in selective loss of Sias before mass detection. Some Sia linkages are partly or completely resistant to sialidases and some are even relatively resistant to acid release. In terms of identifying Sia modifications, the most accurate analysis requires complete release and purification with the modifications intact. The stability of each modification to analytical conditions must be considered—for example, O-acetyl groups are labile to common methods that use alkaline conditions (permethylation and beta-elimination).

Sialic acid–binding lectins are also useful for detecting sialoglycans and their linkages in situ and on isolated sialoglycans. Sambucus nigra (elderberry) lectin binds selectively to α2-6 linked Sias and Maackia amurensis lectins bind selectively to α2-3 linked Sias. Because plants do not express Sias, these lectins may deter animal ingestion. Alternatively, the natural ligands of these lectins may not be sialic acids. Improved probes are now being developed, taking advantage of the fact that many microbes have spent millions of years optimizing their binding to vertebrate sialomes (e.g., the B subunits of various toxins). An interesting tool for detecting a specific Sia modification is the hemagglutinin of influenza C or bovine coronavirus, which binds specifically to 9-O-acetyl Sias on isolated sialoglycans, cells, and tissues, if its esterase function is inactivated.

FUNCTIONS OF SIALIC ACIDS

Sialic acids are endowed with a rich diversity of chemical modalities within a single monosaccharide, which evolution uses to modulate the biophysical environment, to mask underlying glycans, and for specific recognition by complementary Sia-binding proteins that mediate biological processes. These functions are not mutually exclusive—for example, highly sialylated molecules with major biophysical roles (such as mucins) may also express specific sialoglycans that serve as ligands in recognition processes. For simplicity, different roles of Sia are addressed separately below.

Biophysical Roles of Sialic Acids

Mucins are heavily glycosylated O-GalNAc-modified sialoglycoproteins secreted or membrane-bound at epithelial surfaces in airways, and the gastrointestinal and urogenital tracts of animals (Chapter 10). Mucins can be remarkably large (several in the range of 5 to >20 MDa). Their dense anionic charge, as well as their propensity to bind water, makes them efficient as a hydrating and protective barrier at tissue surfaces in contact with the environment. On mucins, as well as other glycoproteins, closely spaced O-GalNAc-linked sialoglycans generate extended polypeptide configurations that would collapse without glycosylation. Clustered sialoglycans along the polypeptide chain can also protect the underlying protein from proteases. Membrane-bound sialoglycans (glycoproteins and glycolipids), which are often quite dense, provide cell surface anionic charge that acts as a barrier and regulates cell surface functions. An extreme example of these biophysical effects is polySia, whose functional impacts are detailed above.

Sialic Acid Recognition by Pathogens and Toxins

Given Sia abundance on cell surfaces (see Figure 15.3), it is unsurprising that numerous animal pathogens evolved to target these molecules. Indeed, highly specific Sia-binding proteins were first discovered on human pathogens and their toxins. In the search for host cell receptors for influenza virus, it was discovered that isolated virus cross-linked red blood cells, resulting in hemagglutination. Over time, the red cells then dispersed and could no longer be agglutinated by fresh virus. This led to the concept of a viral “hemagglutinin” (a term still used today in virus typing; e.g., the “H” in H1N1) that binds to a receptor on the red blood cell, which is also susceptible to “receptor destroying enzyme” on the virus. The component released by receptor destroying enzyme was identified as Sia, the hemagglutinin as a Sia-binding protein, and the receptor-destroying enzyme as a sialidase (viral neuraminidase, the “N” in H1N1). Interestingly, the Sia linkage specificity of the hemagglutinin defines host restrictions; with bird influenza virus preferentially binding to Sias in α2-3 linkage and human virus to Sias in α2-6 linkage. Scientists monitoring influenza virus outbreaks test α2-3 versus α2-6 specificity to detect potential emerging human influenza strains. Molecules designed to block the viral sialidase are useful anti-influenza drugs (Chapter 57).

Sia-specific binding proteins are widespread in pathogens and include numerous viral hemagglutinins, bacterial adhesins, bacterial toxins, and parasite-binding proteins (see Table 15.1 for a few examples). Helicobacter pylori, which causes stomach ulcers and cancers, expresses a Sia-specific adhesin, SabA, which contributes to chronic colonization of the stomach lining. The merozoite stage of the malarial parasite P. falciparum can bind to erythrocyte sialoglycans to initiate cell entry. Several bacterial toxins also target sialoglycans. Cholera toxin and the structurally related E. coli heat-labile enterotoxin both bind to Sias on ganglioside GM1 on the intestinal epithelium, whereas tetanus and related botulinum toxins bind to more complex gangliosides (Chapter 37). The toxin from the human pathogen S. typhi binds specifically to Neu5Ac on glycans but not Neu5Gc, influenza type C expresses a hemagglutinin that binds only to 9-O-acetylated Sias. The complexities of Sia diversification are thought to be the outcome of an ongoing evolutionary “arms race” between animals and microbial pathogens (Chapter 20). In this regard, it is notable that O-acetyl and N-glycolyl groups on Sias can limit action of bacterial sialidases and block the binding of some pathogens. Alternately, the same modifications may facilitate binding of pathogens that have adapted to them. Sialoglycans at environmental surfaces (like mucins) or free in biological fluids might provide protection by virtue of their “decoy” inhibition of microbial adherence and/or sialidases. The evolutionary persistence of sialoglycans despite their role in virulent diseases suggests critical physiological roles, some of which are addressed below.

TABLE 15.1.

TABLE 15.1.

A few classic examples of sialic acid–binding proteins in nature

Sialic Acid Recognition within Vertebrates

Sialic acids in vertebrates can act as “biological masks,” preventing recognition of underlying glycans (especially β-linked Gal residues) by intrinsic and extrinsic glycan-binding proteins. They are also essential components of recognition molecules, with roles that vary according to cell type, tissue type, and species. The first mammalian Sia-binding protein found was the complement regulatory molecule factor H, a soluble serum factor that binds cell-surface Sias and protects cells from autoimmune attack, providing a recognition of “self.” Its binding site contains amino acids that engage Sia by complementary charge, hydrogen bonding, and hydrophobic interactions. Human mutations in the Sia-binding site amino acids of factor H result in atypical hemolytic uremic syndrome in humans, a disease caused by excessive complement activation, because of the failure of factor H function. Other variations of factor H increase the risk of age-dependent macular degeneration, a common cause of blindness resulting from inflammation in the eye retina.

Sialic acids are also involved in interactions of white blood cells with the endothelial lining of blood vessels. Circulating neutrophils must bind to and move across the blood vessel wall to clear bacterial infections in tissues. Endothelial cells respond to bacterial infection nearby and quickly send Sia-binding lectins to their surface. E- and P-selectins (Chapter 34) connect with passing neutrophils, which have the complementary sialoglycans on their surface lipids or proteins. Initially rolling, and finally snagged, neutrophils then respond to other signals (including cytokines presented by GAGs, Chapter 17) and work their way into the tissue to fight bacteria. Without Sia-dependent binding by E- and P-selectins, inflammation is compromised and persistent tissue infections ensue. A related lectin, L-selectin, is also involved in trafficking of lymphocytes from blood to lymph.

Siglecs (Sia-binding immunoglobulin-like lectins) constitute a Sia-binding family within the I-type lectins (Chapter 35). In humans, there are 15 Siglecs, all but one of which is found on the surface of different blood cell types. In several cases, binding of Siglecs to their sialoglycan targets on other cells or their own cell surface modulates ongoing immune responses, either damping them to protect from hyperimmune reactions or activating them. The one Siglec not found in the immune system, Siglec-4 (myelin-associated glycoprotein), is in the nervous system, where it aids cell–cell interactions between nerve cells and myelin, the protective and insulating membrane sheath essential to rapid nerve conduction.

Notably, all the above examples of vertebrate Sia-recognizing proteins were discovered serendipitously, via the unexpected abrogating effect of sialidases on a biological process. To date, there has been no systematic effort to search for other examples, but other likely vertebrate Sia-binding lectins are PECAM-1, PILRs, L1-CAM, and as yet unidentified uterine agglutinin.

Lectins in Organisms without Sialic Acids

Some Sia-binding lectins are found in organisms that do not themselves appear to express Sias (see Table 15.1 for examples). In these cases, Sia-binding may defend against sialylated pathogens, such as the protein limulin in the hemolymph (blood-like fluid) of the horseshoe crab, which can trigger foreign cell lysis. Sia-binding lectins in plants, such as elderberry shrubs, may suppress consumption by animals. Of course, some of these Sia-binding properties might be serendipitous, with the true lectin ligands being related to prokaryotic NulOs such as Leg or Pse, and/or Kdo, which is also found in some plants.

SIALIC ACIDS IN DEVELOPMENT AND MALIGNANCY

Although cell lines deficient in Sias grow in culture, disruption of Sia synthesis in mice results in lethality at embryonic day 8.5, with poor differentiation of nerve cells as well as cardiac and skeletal muscle cells. In contrast, disruption of some ST genes in mice is relatively well tolerated, in some cases because of complementarity among related genes. For example, both St8sia2 and St8sia4 must be deleted in mice to fully eliminate polySia, resulting in severe developmental deficits in the brain. Likewise, both St3sia2 and St3sia3 must be deleted to fully block terminal sialylation of brain gangliosides, resulting in early motor and behavioral deficits. Deleting both St3gal4 and St3gal6, but not either one separately, results in loss of leukocyte rolling on selectins. One benefit of having multiple genes and enzymes that make a Sia linkage is that the results of single gene mutations are tempered. In contrast, human mutations in ST3GAL5 alone result in severe early seizures with profound deficits in postnatal cognitive and motor development in humans, mutations in the ST3GAL3 gene result in intellectual impairment, and mutation of human ST8SIA2 is associated with mental illness. Mutations of other STs in mice cause defects in immune system development and function and/or fertility. As mentioned earlier, disruption of the single ST in Drosophila results in severe phenotypes.

Cell and environmental regulation of Sia fine-structure imply roles for Sia modifications. Certain classes of lymphocytes have O-acetylated Sias, and mutations in a sialic acid esterase may result in altered immune function. Expression of polySia and O-acetylation of brain gangliosides varies with developmental stage and location. Differences in O-acetylation of brain gangliosides are reported between cold- and warm-blooded species, and between awake and hibernating animals. Developmental regulation of Neu5Gc expression and O-acetylation expression in the gut mucosa occurs in response to microbial colonization and has been suggested to protect against microorganisms. Similarly, although adult bovine submandibular glands produce large amounts of highly O-acetylated mucins, this modification is scarcely expressed in the corresponding fetal tissue. The type and linkages of endothelial, plasma protein, and erythrocyte Sias can undergo marked changes in responses to inflammatory stimuli. Abnormalities have also been reported in mice depleted in 9-O-acetyl Sias (transgenic for a viral 9-O-acetylesterase). The physiological roles of these Sia modifications are not well established, and there is much yet to be learned.

Certain changes in Sias are also characteristic of cancer. In general, total Sia increases and there are quantitative changes in linkages, with α2-6Gal(NAc) linkages becoming particularly prominent. O-Acetylation of Sia at C-9 can disappear (colon carcinomas) or become prominent (9-O-acetyl-GD3 in melanomas and basal cell carcinomas). Increased expression of polySia may also facilitate cell migration by some cancers. The precise mechanisms by which Sia changes enhance tumorigenesis and/or invasive behavior remain uncertain, although it has been proposed that tumor sialoglycans enhance metastatic dissemination by their ability to alter functions of galectins (Chapter 36) and by enhancing binding to endothelial, leukocyte, and platelet selectins (Chapter 34). Increased sialylation may also mask antigenic sites on tumor cells, which also become more like “self” and evading immune surveillance by engaging factor H and/or Siglecs. Regardless of the mechanisms involved, certain sialylated molecules are also specific markers for some cancers and potential ligands for targeted therapies (Chapter 47).

SIALIC ACIDS IN PHARMACOLOGY

Each role of Sias in physiology and pathology provides opportunities for therapeutic development. Best known are competitive inhibitors of viral sialidases (Relenza and Tamiflu), which hinder budding and spreading of susceptible strains of influenza A and B viruses (Chapters 42 and 57). Another strategy to block Sia-binding pathogens has been to engineer therapeutic sialidases to remove pathogen-binding sites on human tissues. Efforts to use sialoglycans themselves as anti-infectives have not been as successful, although sialylated milk oligosaccharides have been claimed to have some value. Sialic acid mimetic drugs designed to bind to and block selectins (e.g., Rivipansel) have shown much promise in human trials as anti-inflammatory drugs. Strategies are also under study for inducing immune attack of cancer cells with sialoglycoconjugates and for suppressing antibody responses by engaging Siglecs on B cells.

Many sialoglycoproteins have been developed as drugs, including erythropoietin to enhance blood cell production and monoclonal antibodies to target various diseases including cancers (Chapter 57), and appropriate sialylation is a desired goal, not only to optimize half-life, stability, and receptor binding, but also to assure FDA approval. Chemical, recombinant, and other methods are thus in use to maintain appropriate sialylation on biological drugs, and efforts are underway to engineer “humanized” glycosylation (including sialylation) in yeast, insect, or plant cells (that do not typically express Sia but are more economical sources of expressed glycoproteins) (Chapter 56). Notably, differences in sialylation of endogenous and exogenous erythropoietin are used by the World Anti-Doping Agency to detect illicit administration, and have resulted in rescinding of many Olympic and Tour de France medals.

The presence of Neu5Gc is of potential importance in biotherapeutics, because humans have circulating anti-Neu5Gc antibodies, with marked variations in levels and isotypes. The use of animal-derived proteins in biopharmaceutical development can lead to Neu5Gc incorporation, with unwanted results. Similarly, cell therapies under development often use animal sera or support cells, which can provide Neu5Gc to the cell products. Finally, Neu5Gc on animal organs likely contributes to the failure of xenotransplantation (use of animal organs in humans), which led to engineering of CMAH knockout pigs.

ACKNOWLEDGMENTS

The authors appreciate helpful comments and suggestions from Aime Lopez Aguilar, Kristina Mlinac-Jerković, and Yuki Ohkawa.

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Copyright 2015-2017 by The Consortium of Glycobiology Editors, La Jolla, California. All rights reserved.

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Bookshelf ID: NBK453082PMID: 28876847DOI: 10.1101/glycobiology.3e.015

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