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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 28, 2009 |
| Title |
Illumina Genome Analyzer II (Arabidopsis thaliana) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Arabidopsis thaliana |
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| Submission date |
Sep 28, 2009 |
| Last update date |
Jan 05, 2016 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (653)
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GSM399597, GSM399598, GSM399599, GSM399600, GSM415783, GSM415784
GSM415785, GSM415786, GSM415787, GSM415788, GSM415789, GSM415790, GSM415791, GSM415792, GSM415793, GSM415794, GSM415795, GSM415796, GSM415797, GSM415798, GSM415799, GSM456944, GSM456945, GSM518297, GSM518298, GSM518299, GSM518300, GSM518301, GSM518302, GSM518438, GSM518439, GSM518440, GSM518441, GSM518442, GSM518443, GSM518444, GSM518445, GSM518446, GSM518447, GSM518448, GSM518449, GSM518450, GSM518451, GSM518452, GSM518453, GSM518454, GSM518455, GSM518456, GSM518457, GSM518458, GSM518459, GSM518460, GSM518461, GSM518462, GSM518463, GSM518464, GSM518465, GSM518466, GSM518467, GSM530099, GSM530100, GSM530101, GSM532325, GSM532326, GSM532327, GSM532328, GSM542644, GSM542645, GSM543296, GSM554062, GSM554063, GSM554064, GSM554065, GSM567808, GSM567809, GSM567810, GSM567811, GSM567812, GSM567813, GSM567814, GSM567815, GSM567816, GSM567817, GSM567818, GSM567819, GSM575243, GSM575244, GSM575245, GSM575246, GSM575247, GSM588602, GSM588603, GSM605654, GSM605655, GSM605656, GSM605657, GSM605658, GSM605659, GSM605660, GSM605661, GSM605662, GSM605663, GSM605664, GSM605665, GSM607723, GSM607724, GSM607725, GSM607726, GSM607727, GSM607728, GSM607729, GSM607730, GSM607731, GSM607732, GSM607735, GSM608536, GSM608537, GSM608538, GSM608539, GSM608540, GSM608541, GSM608542, GSM608543, GSM622040, GSM622041, GSM622042, GSM622043, GSM622044, GSM622045, GSM622046, GSM622047, GSM623879, GSM623880, GSM657970, GSM657971, GSM706268, GSM706269, GSM706702, GSM706704, GSM707678, GSM707679, GSM707680, GSM707681, GSM707682, GSM707683, GSM707684, GSM707685, GSM707686, GSM707687, GSM707688, GSM707689, GSM707690, GSM707691, GSM711891, GSM711892, GSM711893, GSM711894, GSM711895, GSM756821, GSM756822, GSM756823, GSM756824, GSM767709, GSM767710, GSM767711, GSM767712, GSM767713, GSM767714, GSM767715, GSM785961, GSM785962, GSM785963, GSM785964, GSM785965, GSM785966, GSM785967, GSM785968, GSM785969, GSM785970, GSM800621, GSM800622, GSM815532, GSM815533, GSM815534, GSM833228, GSM833229, GSM833230, GSM833231, GSM833232, GSM833233, GSM844489, GSM844490, GSM844491, GSM847326, GSM847327, GSM847328, GSM847329, GSM847330, GSM847331, GSM847332, GSM847333, GSM847334, GSM847335, GSM847336, GSM847337, GSM847338, GSM847339, GSM849860, GSM849861, GSM849862, GSM849863, GSM849864, GSM849866, GSM849867, GSM852792, GSM852793, GSM852794, GSM852795, GSM852796, GSM852797, GSM860139, GSM860140, GSM889585, GSM889586, GSM901005, GSM901006, GSM901007, GSM901008, GSM938330, GSM938334, GSM952095, GSM952096, GSM952097, GSM952098, GSM952099, GSM952100, GSM952101, GSM953370, GSM953371, GSM953372, GSM953373, GSM954584, GSM954585, GSM954590, GSM954591, GSM954598, GSM954603, GSM954607, GSM954612, GSM954616, GSM954617, GSM954618, GSM954619, GSM954620, GSM954621, GSM954715, GSM954716, GSM954717, GSM954718, GSM954719, GSM980695, GSM980696, GSM980697, GSM1014117, GSM1014120, GSM1014122, GSM1014124, GSM1014126, GSM1014128, GSM1014129, GSM1014130, GSM1014131, GSM1014132, GSM1014133, GSM1014134, GSM1014135, GSM1017156, GSM1017157, GSM1017158, GSM1017159, GSM1017160, GSM1017161, GSM1017162, GSM1017163, GSM1017164, GSM1017165, GSM1017166, GSM1017167, GSM1017168, GSM1017169, GSM1017170, GSM1017171, GSM1017172, GSM1017173, GSM1017174, GSM1017175, GSM1017176, GSM1017177, GSM1017178, GSM1067405, GSM1067406, GSM1080095, GSM1080096, GSM1087973, GSM1087974, GSM1087975, GSM1087976, GSM1087977, GSM1087978, GSM1087979, GSM1087980, GSM1087981, GSM1087982, GSM1087983, GSM1087984, GSM1087985, GSM1087986, GSM1087987, GSM1087988, GSM1087989, GSM1087990, GSM1087991, GSM1087992, GSM1087993, GSM1087994, GSM1087995, GSM1087996, GSM1087997, GSM1087998, GSM1087999, GSM1130063, GSM1130064, GSM1142624, GSM1142625, GSM1142626, GSM1142627, GSM1142628, GSM1142629, GSM1142630, GSM1142631, GSM1155403, GSM1155404, GSM1155405, GSM1155406, GSM1155407, GSM1155408, GSM1155409, GSM1173202, GSM1173203, GSM1173204, GSM1173205, GSM1173206, GSM1173207, GSM1196645, GSM1196646, GSM1196647, GSM1196648, GSM1196649, GSM1196650, GSM1207129, GSM1207130, GSM1207131, GSM1207132, GSM1208328, GSM1208334, GSM1208335, GSM1298819, GSM1298820, GSM1298821, GSM1298822, GSM1316797, GSM1325498, GSM1325499, GSM1325500, GSM1416617, GSM1416618, GSM1416619, GSM1416620, GSM1482283, GSM1482284, GSM1566964, GSM1566965, GSM1566966, GSM1566967, GSM1566968, GSM1566969, GSM1644978, GSM1644979, GSM1644980, GSM1644981, GSM1644982, GSM1644983, GSM1644984, GSM1644985, GSM1644986, GSM1644987, GSM1644988, GSM1644989, GSM1644990, GSM1644991, GSM1644992, GSM1644993, GSM1644994, GSM1644995, GSM1656443, GSM1656444, GSM1657733, GSM1669384, GSM1669385, GSM1669386, GSM1669387, GSM1669388, GSM1669389, GSM1669390, GSM1669391, GSM1669392, GSM1669393, GSM1669394, GSM1669395, GSM1669396, GSM1669397, GSM1669398, GSM1669399, GSM1669400, GSM1669401, GSM1669402, GSM1669403, GSM1669404, GSM1669405, GSM1669406, GSM1669407, GSM1669408, GSM1669409, GSM1669410, GSM1669411, GSM1669412, GSM1669413, GSM1669414, GSM1669415, GSM1669416, GSM1669417, GSM1669418, GSM1669419, GSM1669420, GSM1669421, GSM1669422, GSM1669423, GSM1669424, GSM1669425, GSM1669426, GSM1669427, GSM1808449, GSM1808454, GSM1808455, GSM1859793, GSM1859794, GSM1859795, GSM1859796, GSM1859797, GSM1859798, GSM1859799, GSM1859800, GSM1859801, GSM1859802, GSM1859803, GSM1859804, GSM1859805, GSM1859806, GSM1859807, GSM1859808, GSM1859809, GSM1859810, GSM1859811, GSM1859812, GSM1859813, GSM1859814, GSM1859815, GSM1859816, GSM1859817, GSM1859818, GSM1859819, GSM1859820, GSM1862904, GSM1862905, GSM1862906, GSM1862907, GSM1862908, GSM1862909, GSM1862910, GSM1862911, GSM1862912, GSM1862913, GSM1970976, GSM1970977, GSM1970978, GSM1970979, GSM2086281, GSM2086282, GSM2090459, GSM2090460...
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| Series (91)
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| GSE15922 |
Genome-wide demethylation of Arabidopsis endosperm |
| GSE16545 |
Arabidopsis Argonaute4, Argonaute6 and Argonaute9 associated small RNAs |
| GSE18302 |
Deep sequencing of small RNAs in the trasngenic wild type plant and the IWR1-type transcription factor mutant, dms4 |
| GSE20663 |
small RNAs sequences from grafted Arabidopsis thaliana and Nicotiana benthamiana tissues |
| GSE20682 |
High-throughput SuperSAGE for digital gene expression analysis of multiple samples using Next Generation Sequencing |
| GSE21152 |
Conservation and divergence of methylation patterning in plants and animals |
| GSE21301 |
Orchestration of development by the bifunctional transcription factor, APETALA2 |
| GSE21673 |
Relationship between nucleosome positioning and DNA methylation |
| GSE21781 |
Mapping origins of replication in Arabidopsis thaliana: Examination of BrdU labeled DNA and unlabeled DNA in one cell type |
| GSE21821 |
Relationship between nucleosome positioning and DNA methylation: Bisulfite-Seq, ChIP-Seq, and Mnase-Seq |
| GSE21828 |
Mapping origins of replication in Arabidopsis thaliana |
| GSE22252 |
Global identification of Arabidopsis thaliana ARGONAUTE1-associated small RNA. |
| GSE22411 |
Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases |
| GSE23439 |
Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis |
| GSE24568 |
A biophysical DNA binding model for the LEAFY transcription factor reveals the evolutionary fluidity of its binding sites |
| GSE24569 |
Homology-guided Assembly of the Genomes of the Four Diverse Accessions Ler, C24, Bur-0 and Kro-0 |
| GSE24644 |
Extensive imprinted gene expression in Arabidopsis endosperm |
| GSE24696 |
RNA-seq of Arabidopsis spl7 identifies two genes required for copper acquisition and a copper dependence of iron homeostasis |
| GSE25280 |
Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds. |
| GSE25404 |
Transcript profiling of wild-type and dcl1-5 early globular embryos |
| GSE26722 |
Role of class III HD‐ZIP transcription factors in shade signaling |
| GSE28512 |
DCP5, a highly conserved P-body-nucleating protein, regulates multiple small RNA-mediated silencing pathways in Arabidopsis (smRNA-seq) |
| GSE28524 |
DCP5, a highly conserved P-body-nucleating protein, regulates multiple small RNA-mediated silencing pathways in Arabidopsis |
| GSE28537 |
AGO6 functions in RNA-mediated transcriptional gene silencing in shoot and root meristems in Arabidopsis thaliana |
| GSE28591 |
Characterization of AGO1-/AGO4-associated smRNAs |
| GSE28733 |
Small RNA sequencing in nine-day old nutrient-replete and N or P-limited wild type Arabidopsis seedlings |
| GSE30511 |
Allele specific mRNA-seq expression profiling in Arabidopsis thaliana Col and Ler reciprocal F1 hybrid embryo and endosperm |
| GSE30970 |
Arabidopsis AGO5 contributes to a POL II-based RNA silencing pathway directing epigenetic marks |
| GSE31211 |
sRNA sequencing from wild-type Arabidopsis (diverse tissue types) |
| GSE31651 |
Mobile 24 nt small RNAs direct transcriptional gene silencing in the root meristems of Arabidopsis thaliana |
| GSE32318 |
2-week-old Arabidopsis seedlings (Columbia ecotype) |
| GSE32927 |
Natural variation in processability of individual Arabidopsis thaliana microRNAs |
| GSE33713 |
Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos |
| GSE34207 |
Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana |
| GSE34318 |
Mapping regulatory elements using signatures of open chromatin in Arabidopsis thaliana |
| GSE34476 |
Analysis of the Arabidopsis shoot meristem transcriptome during floral transition identifies distinct regulatory patterns and an LRR protein that promotes flowering |
| GSE34654 |
Genome-wide identification of non-coding RNAs targeted by XRN exoribonucleases in collaboration with FRY1 using RNA-Seq in Arabidopsis thaliana. |
| GSE34984 |
Transcriptomic changes in aquaporin PIP1;2 deficient Arabodposis plants |
| GSE36360 |
The effect of over-expression of PRR5-VP in Arabidopsis seedlings |
| GSE36361 |
Genome-wide maps of PRR5 binding loci in Arabidopsis thaliana |
| GSE36783 |
High-throughput Illumina sequencing of bisulfite transformed genomic DNA from Arabidopsis thaliana wild-type, msh1 mutant and MSH1-epiF3 lines |
| GSE38286 |
DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis. |
| GSE38922 |
Distinctive profiles of small RNA couple inverted repeat-induced post-transcriptional gene silencing with endogenous RNA silencing pathways in Arabidopsis |
| GSE38991 |
Genome-wide DNA methylation maps of Arabidopsis thaliana in two seasons |
| GSE39045 |
Deposition of histone variant H2A.Z within gene bodies regulates responsive genes |
| GSE39051 |
Integrative genome-wide analysis reveals HLP1, a novel RNA-binding protein， regulates plant flowering by targeted alternative polyadenylation |
| GSE39885 |
Arabidopsis AGO1 and AGO10 bound sRNAs |
| GSE41302 |
DDM1 and RdDM are the major regulators of transposon DNA methylation in Arabidopsis |
| GSE41432 |
Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the eukaryotic steady state transcriptome |
| GSE41433 |
Polypyrimidine tract-binding protein homologues from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes |
| GSE43637 |
Genome-wide ATAF1 binding sites in Arabidopsis thaliana |
| GSE44622 |
Comprehensive investigation of miRNAs enhanced by analysis of sequence variants, expression patterns, AGO loading and target cleavage |
| GSE46429 |
Multiple RNA recognition patterns during microRNA biogenesis in plants |
| GSE46986 |
Developmental dynamics of floral gene regulation [ChIP-Seq] |
| GSE46987 |
Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development |
| GSE47722 |
Maternal siRNAs mediate spatial and temporal regulation of gene expression and seed development in Arabidopsis |
| GSE48235 |
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana |
| GSE49282 |
Identification of Arabidopsis thaliana PRR7 regulated clock components and circadian outputs through genome-wide binding sites analysis |
| GSE49792 |
Small RNA from Arabidopsis thaliana with RNA silencing directed to Chalcone Synthase (At5G13930) by a hairpin RNA, a 21-nt artificial miRNA and a 22-nt artificial miRNA in the pap1-D over-expressing background |
| GSE49866 |
Plants encode a general siRNA suppressor that is induced and suppressed by viruses |
| GSE52762 |
Arabidopsis Root Methylation and Root Nucleosome Positioning |
| GSE52809 |
Poly(A)-tail profiling reveals an embryonic switch in translational control |
| GSE53687 |
3’ and 5’ end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs [Arabidopsis thaliana] |
| GSE53688 |
3' and 5' end modifications in plant microRNA post biogenesis: evidences from NGS of small RNAs |
| GSE58662 |
RNA-seq analysis of the effect of kanamycin and the ABC transporter AtWBC19 on Arabidopsis thaliana seedlings reveals changes in metal content |
| GSE60554 |
Genome-wide identification of MYB3R3-bound genes |
| GSE64245 |
A SAM oligomerization domain shapes the genomic binding landscape of the LEAFY transcription factor |
| GSE67332 |
Potential role of natural variation in the Arabidopsis CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden |
| GSE67813 |
XCT is a novel regulator of chromatin functionally conserved across eukaryotes |
| GSE67903 |
Genome-wide identification of CCA1-bound genes in Arabidopsis by ChIP-Seq |
| GSE68370 |
Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana [ChIP-Seq] |
| GSE68440 |
Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana |
| GSE69904 |
Arginine methylation regulates widespread alternative polyadenylation |
| GSE70533 |
Genome-wide Identification of CCA1 Targets Uncovers an Expanded Clock Network in Arabidopsis |
| GSE72303 |
The effect of developmental transitions on small RNAs in Arabidopsis thaliana shoots |
| GSE72461 |
Novel JAZ co-operativity and unexpected JA dynamics underpin Arabidopsis defence responses to Pseudomonas syringae infection |
| GSE75959 |
mRNA-seq data of 14 days old Arabidopsis seedlings in Col-0 and At rz-1b At rz-1c double mutant |
| GSE79275 |
Transcript profiling of the roots and leaves of opt3-2 mutant and wild type Arabidopsis |
| GSE79554 |
Targets of FRUITFULL in the pistil/silique [ChIP-Seq] |
| GSE79555 |
Expression profiling and identification of targets of FRUITFULL in the Arabidopsis pistil/silique |
| GSE87506 |
Characterization of CAMTA mutant plants |
| GSE87760 |
Col-0 leaves and root, control and iron-deficient |
| GSE103785 |
Genomewide identification of LHY binding targets |
| GSE104677 |
The effect of cdc5-1 on small RNA accumulation |
| GSE104885 |
The effect of ddl-1 on small RNA profile |
| GSE128026 |
The unstable lncRNA OLE negatively regulates its sense-overlapping neighbor UNE15 and osmotic tolerance of Arabidopsis |
| GSE128156 |
Cadmium interference with iron sensing reveals transcriptional programs sensitive and insensitive to reactive oxygen species |
| GSE128157 |
Impaired sensing of Fe status in opt3-2 leads to opposite transcriptional programs in leaves and roots, and uncovers novel roles for reactive oxygen species signaling within the Fe homeostasis network |
| GSE130463 |
pICln, an spliceosome assembly chaperone, controls alternative splicing, flowering time and stress responses in Arabidopsis |
| GSE132449 |
Epigenetic marks correlated with differential parental genome contributions to plant zygotic transcriptomes |
| GSE135559 |
Transmitting tract transcriptome profile in the quadruple mutant stk ces-4 bee1 bee3 compared to wild type |
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| Supplementary data files not provided |
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