|
| Status |
Public on Nov 06, 2011 |
| Title |
Unlabelled DNA rep2 |
| Sample type |
SRA |
| |
|
| Source name |
MM2d cells
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
cell line: MM2d
label: unlabelled
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
The DNA libraries for both BrdU DNA and unlabelled DNA were generated and sequenced on Genome Analyzer II as per the manufacturer instructions.
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
RANDOM |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
Alignment: Sequence reads were obtained and mapped to the TAIR8 Arabidospis genome using SeqMap. Uniquely mapping with three or fewer mismatches were retained.
|
| |
|
| Submission date |
Aug 30, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
Hume Stroud |
| Organization name |
UT Southwestern
|
| Street address |
5323 Harry Hines Blvd
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390 |
| Country |
USA |
| |
|
| Platform ID |
GPL9302 |
| Series (2) |
| GSE21781 |
Mapping origins of replication in Arabidopsis thaliana: Examination of BrdU labeled DNA and unlabeled DNA in one cell type |
| GSE21828 |
Mapping origins of replication in Arabidopsis thaliana |
|
| Relations |
| SRA |
SRX028171 |
| BioSample |
SAMN00115677 |
