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Platform GPL8321 Query DataSets for GPL8321
Status Public on Mar 18, 2009
Title [Mouse430A_2] Affymetrix Mouse Genome 430A 2.0 Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site

The GeneChip Mouse Genome 430A 2.0 Array is a single array representing approximately 14,000 well-characterized mouse genes that can be used to explore biology and disease processes.

Provides coverage of well-substantiated genes in the transcribed mouse genome on a single array.

Analyzes the expression level of approximately 14,000 well-characterized mouse genes.

Sequences used in the design of the array were selected from GenBank®, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 107, June 2002) and then refined by analysis and comparison with the publicly available draft assembly of the mouse genome from the Whitehead Institute for Genome Research (MGSC, April 2002).

All probe sets represented on the GeneChip Mouse Expression Array 430A are included on the GeneChip Mouse Genome 430A 2.0 Array. These two arrays were initially accessioned in GEO as GPL339. However, in March 2009 the 430A 2.0 was accessioned as GPL8321, and all 430A 2.0 data was linked to this new platform.
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 08, 2012: annotation table updated with netaffx build 32
July 01, 2016: annotation table updated with netaffx build 35
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=moe430A-20
http://www.affymetrix.com/analysis/index.affx
Submission date Mar 18, 2009
Last update date May 04, 2018
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (6974) GSM30082, GSM30084, GSM30085, GSM41498, GSM41500, GSM41501 
Series (523)
GSE1727 Isolation and angiogenesis by endothelial progenitors in the fetal liver
GSE2259 Testicular gene expression in SCARKO mice during prepuberty
GSE2260 Testicular gene expression in SCARKO mice at day 10
Relations
Alternative to GPL16763 (Alternative CDF [Brainarray V.10, Mm430A_Mm_ENTREZG_v10])
Alternative to GPL21092 (alternative)

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID identifies controls
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
1415670_at BC024686 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:BC024686.1 /DB_XREF=gi:19354080 /FEA=FLmRNA /CNT=416 /TID=Mm.26422.1 /TIER=FL+Stack /STK=110 /UG=Mm.26422 /LL=54161 /UG_GENE=Copg1 /DEF=Mus musculus, coatomer protein complex, subunit gamma 1, clone MGC:30335 IMAGE:3992144, mRNA, complete cds. /PROD=coatomer protein complex, subunit gamma 1 /FL=gb:AF187079.1 gb:BC024686.1 gb:NM_017477.1 gb:BC024896.1 BC024686 coatomer protein complex, subunit gamma 1 Copg1 54161 NM_017477 /// NM_201244 /// XM_006506386 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0051683 // establishment of Golgi localization // not recorded /// 0072384 // organelle transport along microtubule // not recorded 0000139 // Golgi membrane // not recorded /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from electronic annotation /// 0030663 // COPI-coated vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation
1415671_at NM_013477 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:NM_013477.1 /DB_XREF=gi:7304908 /GEN=Atp6v0d1 /FEA=FLmRNA /CNT=197 /TID=Mm.1081.1 /TIER=FL+Stack /STK=114 /UG=Mm.1081 /LL=11972 /DEF=Mus musculus ATPase, H+ transporting, lysosomal 38kDa, V0 subunit D isoform 1 (Atp6v0d1), mRNA. /PROD=ATPase, H+ transporting, lysosomal 38kDa, V0subunit D isoform 1 /FL=gb:U21549.1 gb:U13840.1 gb:BC011075.1 gb:NM_013477.1 NM_013477 ATPase, H+ transporting, lysosomal V0 subunit D1 Atp6v0d1 11972 NM_013477 0006200 // ATP catabolic process // inferred from direct assay /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0007420 // brain development // inferred from electronic annotation /// 0015991 // ATP hydrolysis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport // inferred from electronic annotation /// 0030030 // cell projection organization // inferred from electronic annotation /// 0042384 // cilium assembly // inferred from sequence or structural similarity /// 1902600 // hydrogen ion transmembrane transport // inferred from direct assay 0005765 // lysosomal membrane // not recorded /// 0005769 // early endosome // inferred from direct assay /// 0005813 // centrosome // not recorded /// 0008021 // synaptic vesicle // not recorded /// 0016020 // membrane // not recorded /// 0016324 // apical plasma membrane // not recorded /// 0016471 // vacuolar proton-transporting V-type ATPase complex // not recorded /// 0033179 // proton-transporting V-type ATPase, V0 domain // inferred from electronic annotation /// 0043005 // neuron projection // not recorded /// 0043234 // protein complex // not recorded /// 0043679 // axon terminus // not recorded /// 0070062 // extracellular vesicular exosome // not recorded 0005515 // protein binding // inferred from electronic annotation /// 0008553 // hydrogen-exporting ATPase activity, phosphorylative mechanism // inferred from direct assay /// 0015078 // hydrogen ion transmembrane transporter activity // inferred from electronic annotation /// 0032403 // protein complex binding // not recorded
1415672_at NM_020585 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:NM_020585.1 /DB_XREF=gi:10181207 /GEN=AB041568 /FEA=FLmRNA /CNT=213 /TID=Mm.17035.1 /TIER=FL+Stack /STK=102 /UG=Mm.17035 /LL=57437 /DEF=Mus musculus hypothetical protein, MNCb-1213 (AB041568), mRNA. /PROD=hypothetical protein, MNCb-1213 /FL=gb:BC016894.1 gb:NM_020585.1 NM_020585 golgi autoantigen, golgin subfamily a, 7 Golga7 57437 NM_001042484 /// NM_020585 /// XM_006509179 0006893 // Golgi to plasma membrane transport // not recorded /// 0018230 // peptidyl-L-cysteine S-palmitoylation // not recorded /// 0043001 // Golgi to plasma membrane protein transport // not recorded /// 0050821 // protein stabilization // not recorded 0000139 // Golgi membrane // not recorded /// 0002178 // palmitoyltransferase complex // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0031228 // intrinsic component of Golgi membrane // not recorded /// 0070062 // extracellular vesicular exosome // not recorded
1415673_at NM_133900 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:NM_133900.1 /DB_XREF=gi:19527115 /GEN=AI480570 /FEA=FLmRNA /CNT=139 /TID=Mm.10623.1 /TIER=FL+Stack /STK=96 /UG=Mm.10623 /LL=100678 /DEF=Mus musculus expressed sequence AI480570 (AI480570), mRNA. /PROD=expressed sequence AI480570 /FL=gb:BC002251.1 gb:NM_133900.1 NM_133900 phosphoserine phosphatase Psph 100678 NM_133900 /// XM_006504274 /// XM_006504275 0006563 // L-serine metabolic process // not recorded /// 0006564 // L-serine biosynthetic process // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // cellular amino acid biosynthetic process // inferred from electronic annotation /// 0009612 // response to mechanical stimulus // inferred from electronic annotation /// 0016311 // dephosphorylation // not recorded /// 0031667 // response to nutrient levels // inferred from electronic annotation /// 0033574 // response to testosterone // inferred from electronic annotation 0005737 // cytoplasm // not recorded /// 0043005 // neuron projection // not recorded 0000287 // magnesium ion binding // not recorded /// 0004647 // phosphoserine phosphatase activity // not recorded /// 0005509 // calcium ion binding // not recorded /// 0008253 // 5'-nucleotidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation
1415674_a_at NM_021789 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:NM_021789.1 /DB_XREF=gi:11140824 /GEN=Sbdn /FEA=FLmRNA /CNT=163 /TID=Mm.29814.1 /TIER=FL+Stack /STK=95 /UG=Mm.29814 /LL=60409 /DEF=Mus musculus synbindin (Sbdn), mRNA. /PROD=synbindin /FL=gb:NM_021789.1 gb:AF233340.1 NM_021789 trafficking protein particle complex 4 Trappc4 60409 NM_021789 /// XM_006510523 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // traceable author statement /// 0016358 // dendrite development // inferred from direct assay /// 0045212 // neurotransmitter receptor biosynthetic process // traceable author statement 0005622 // intracellular // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // inferred from direct assay /// 0005801 // cis-Golgi network // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030008 // TRAPP complex // inferred from direct assay /// 0030054 // cell junction // inferred from electronic annotation /// 0030425 // dendrite // inferred from direct assay /// 0045202 // synapse // inferred from direct assay /// 0045211 // postsynaptic membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction
1415675_at BC008256 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:BC008256.1 /DB_XREF=gi:14198389 /FEA=FLmRNA /CNT=138 /TID=Mm.22001.1 /TIER=FL+Stack /STK=92 /UG=Mm.22001 /LL=13481 /UG_GENE=Dpm2 /DEF=Mus musculus, dolichol-phosphate (beta-D) mannosyltransferase 2, clone MGC:6506 IMAGE:2648752, mRNA, complete cds. /PROD=dolichol-phosphate (beta-D) mannosyltransferase2 /FL=gb:AB013360.1 gb:NM_010073.1 gb:BC008256.1 BC008256 dolichol-phosphate (beta-D) mannosyltransferase 2 Dpm2 13481 NM_010073 0006486 // protein glycosylation // inferred from electronic annotation /// 0006506 // GPI anchor biosynthetic process // not recorded /// 0009059 // macromolecule biosynthetic process // inferred from electronic annotation /// 0019348 // dolichol metabolic process // not recorded /// 0031647 // regulation of protein stability // not recorded /// 0050790 // regulation of catalytic activity // not recorded /// 0097502 // mannosylation // not recorded 0000506 // glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // not recorded /// 0030176 // integral component of endoplasmic reticulum membrane // inferred from electronic annotation /// 0033185 // dolichol-phosphate-mannose synthase complex // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded 0004582 // dolichyl-phosphate beta-D-mannosyltransferase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030234 // enzyme regulator activity // not recorded
1415676_a_at NM_011186 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:NM_011186.1 /DB_XREF=gi:6755203 /GEN=Psmb5 /FEA=FLmRNA /CNT=172 /TID=Mm.8911.1 /TIER=FL+Stack /STK=86 /UG=Mm.8911 /LL=19173 /DEF=Mus musculus proteasome (prosome, macropain) subunit, beta type 5 (Psmb5), mRNA. /PROD=proteasome beta type subunit 5 /FL=gb:BC012246.1 gb:AB003304.1 gb:AF060091.1 gb:NM_011186.1 NM_011186 proteasome (prosome, macropain) subunit, beta type 5 Psmb5 19173 NM_011186 0006508 // proteolysis // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // not recorded 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from direct assay /// 0016787 // hydrolase activity // inferred from electronic annotation
1415677_at NM_026819 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:NM_026819.1 /DB_XREF=gi:13386167 /GEN=1110029G07Rik /FEA=FLmRNA /CNT=131 /TID=Mm.21623.1 /TIER=FL+Stack /STK=64 /UG=Mm.21623 /LL=68710 /DEF=Mus musculus RIKEN cDNA 1110029G07 gene (1110029G07Rik), mRNA. /PROD=RIKEN cDNA 1110029G07 /FL=gb:NM_026819.1 gb:BC003930.1 NM_026819 dehydrogenase/reductase (SDR family) member 1 Dhrs1 52585 NM_026819 /// XM_006519259 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from direct assay /// 0005783 // endoplasmic reticulum // not recorded 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0018446 // pinocarveol dehydrogenase activity // inferred from electronic annotation /// 0018447 // chloral hydrate dehydrogenase activity // inferred from electronic annotation /// 0018448 // hydroxymethylmethylsilanediol oxidase activity // inferred from electronic annotation /// 0018449 // 1-phenylethanol dehydrogenase activity // inferred from electronic annotation /// 0018450 // myrtenol dehydrogenase activity // inferred from electronic annotation /// 0034522 // cis-1,2-dihydroxy-1,2-dihydro-8-carboxynaphthalene dehydrogenase activity // inferred from electronic annotation /// 0034582 // 3-hydroxy-4-methyloctanoyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0034778 // 2-hydroxy-4-isopropenylcyclohexane-1-carboxyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0034817 // cis-9,10-dihydroanthracene-9,10-diol dehydrogenase activity // inferred from electronic annotation /// 0034821 // citronellol dehydrogenase activity // inferred from electronic annotation /// 0034847 // naphthyl-2-hydroxymethyl-succinyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0034863 // 2,4,4-trimethyl-1-pentanol dehydrogenase activity // inferred from electronic annotation /// 0034868 // 2,4,4-trimethyl-3-hydroxypentanoyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0034871 // 1-hydroxy-4,4-dimethylpentan-3-one dehydrogenase activity // inferred from electronic annotation /// 0034891 // endosulfan diol dehydrogenase activity // inferred from electronic annotation /// 0034901 // endosulfan hydroxyether dehydrogenase activity // inferred from electronic annotation /// 0034918 // 3-hydroxy-2-methylhexanoyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0034944 // 3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0042469 // versicolorin reductase activity // inferred from electronic annotation /// 0045703 // ketoreductase activity // inferred from electronic annotation
1415678_at BC008595 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:BC008595.1 /DB_XREF=gi:14250330 /FEA=FLmRNA /CNT=154 /TID=Mm.3766.1 /TIER=FL+Stack /STK=52 /UG=Mm.3766 /LL=19042 /UG_GENE=Ppm1a /DEF=Mus musculus, protein phosphatase 1A, magnesium dependent, alpha isoform, clone MGC:6077 IMAGE:3581897, mRNA, complete cds. /PROD=protein phosphatase 1A, magnesium dependent,alpha isoform /FL=gb:NM_008910.1 gb:D28117.1 gb:BC008595.1 BC008595 protein phosphatase 1A, magnesium dependent, alpha isoform Ppm1a 19042 NM_008910 /// XM_006515600 /// XM_006515601 /// XM_006515602 /// XM_006515603 0006470 // protein dephosphorylation // inferred from direct assay /// 0006470 // protein dephosphorylation // inferred from mutant phenotype /// 0006470 // protein dephosphorylation // not recorded /// 0006499 // N-terminal protein myristoylation // inferred from direct assay /// 0010991 // negative regulation of SMAD protein complex assembly // not recorded /// 0016055 // Wnt signaling pathway // not recorded /// 0016311 // dephosphorylation // not recorded /// 0030177 // positive regulation of Wnt signaling pathway // not recorded /// 0030512 // negative regulation of transforming growth factor beta receptor signaling pathway // not recorded /// 0035970 // peptidyl-threonine dephosphorylation // not recorded /// 0042347 // negative regulation of NF-kappaB import into nucleus // not recorded /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // not recorded /// 0043124 // negative regulation of I-kappaB kinase/NF-kappaB signaling // not recorded /// 0045893 // positive regulation of transcription, DNA-templated // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay /// 0005891 // voltage-gated calcium channel complex // not recorded /// 0016020 // membrane // inferred from direct assay /// 0043005 // neuron projection // not recorded 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from direct assay /// 0004722 // protein serine/threonine phosphatase activity // not recorded /// 0004871 // signal transducer activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008022 // protein C-terminus binding // not recorded /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0030145 // manganese ion binding // inferred from electronic annotation /// 0033192 // calmodulin-dependent protein phosphatase activity // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070412 // R-SMAD binding // not recorded
1415679_at NM_025498 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:NM_025498.1 /DB_XREF=gi:13384921 /GEN=1700023M09Rik /FEA=FLmRNA /CNT=114 /TID=Mm.41511.1 /TIER=FL+Stack /STK=44 /UG=Mm.41511 /LL=66340 /DEF=Mus musculus RIKEN cDNA 1700023M09 gene (1700023M09Rik), mRNA. /PROD=RIKEN cDNA 1700023M09 /FL=gb:BC024347.1 gb:NM_025498.1 NM_025498 presenilin enhancer 2 homolog (C. elegans) Psenen 66340 NM_025498 0006509 // membrane protein ectodomain proteolysis // not recorded /// 0007219 // Notch signaling pathway // inferred from electronic annotation /// 0007220 // Notch receptor processing // inferred from mutant phenotype /// 0016485 // protein processing // not recorded /// 0043085 // positive regulation of catalytic activity // not recorded 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // not recorded /// 0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction
1415680_at NM_008569 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:NM_008569.1 /DB_XREF=gi:6678833 /GEN=Mcpr /FEA=FLmRNA /CNT=128 /TID=Mm.3989.1 /TIER=FL+Stack /STK=41 /UG=Mm.3989 /LL=17222 /DEF=Mus musculus meiotic check point regulator (Mcpr), mRNA. /PROD=meiotic check point regulator /FL=gb:NM_008569.1 NM_008569 anaphase promoting complex subunit 1 Anapc1 17222 NM_008569 /// XM_006498857 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation /// 0070979 // protein K11-linked ubiquitination // not recorded 0005634 // nucleus // inferred from direct assay /// 0005680 // anaphase-promoting complex // not recorded 0005515 // protein binding // inferred from physical interaction
1415681_at NM_053164 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:NM_053164.1 /DB_XREF=gi:17298675 /GEN=Mrpl43 /FEA=FLmRNA /CNT=111 /TID=Mm.44174.1 /TIER=FL+Stack /STK=37 /UG=Mm.44174 /LL=94067 /DEF=Mus musculus mitochondrial ribosomal protein L43 (Mrpl43), mRNA. /PROD=mitochondrial ribosomal protein L43 /FL=gb:AB049657.1 gb:NM_053164.1 NM_053164 mitochondrial ribosomal protein L43 Mrpl43 94067 NM_053164 0006412 // translation // not recorded 0005739 // mitochondrion // inferred from direct assay /// 0005762 // mitochondrial large ribosomal subunit // not recorded /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // not recorded /// 0044822 // poly(A) RNA binding // not recorded
1415682_at NM_023045 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:NM_023045.1 /DB_XREF=gi:12746421 /GEN=Ranbp16 /FEA=FLmRNA /CNT=199 /TID=Mm.27607.1 /TIER=FL+Stack /STK=33 /UG=Mm.27607 /LL=65246 /DEF=Mus musculus RAN binding protein 16 (Ranbp16), mRNA. /PROD=RAN binding protein 16 /FL=gb:NM_023045.1 NM_023045 exportin 7 Xpo7 65246 NM_023045 /// XM_006519359 /// XM_006519360 /// XM_006519361 0006611 // protein export from nucleus // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation 0005622 // intracellular // traceable author statement /// 0005623 // cell // traceable author statement /// 0005634 // nucleus // not recorded /// 0005643 // nuclear pore // not recorded /// 0005737 // cytoplasm // not recorded 0005049 // nuclear export signal receptor activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008536 // Ran GTPase binding // traceable author statement
1415683_at BC016526 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:BC016526.1 /DB_XREF=gi:16741408 /FEA=FLmRNA /CNT=101 /TID=Mm.10265.1 /TIER=FL+Stack /STK=30 /UG=Mm.10265 /LL=18107 /UG_GENE=Nmt1 /DEF=Mus musculus, N-myristoyltransferase, clone MGC:8150 IMAGE:3589678, mRNA, complete cds. /PROD=N-myristoyltransferase /FL=gb:NM_008707.1 gb:AF043326.1 gb:BC021635.1 gb:BC016526.1 BC016526 N-myristoyltransferase 1 Nmt1 18107 NM_008707 /// XM_006532445 0001701 // in utero embryonic development // inferred from mutant phenotype /// 0006499 // N-terminal protein myristoylation // inferred from mutant phenotype /// 0018008 // N-terminal peptidyl-glycine N-myristoylation // not recorded 0005737 // cytoplasm // not recorded /// 0005737 // cytoplasm // traceable author statement /// 0005886 // plasma membrane // not recorded /// 0015629 // actin cytoskeleton // not recorded /// 0030054 // cell junction // not recorded 0004379 // glycylpeptide N-tetradecanoyltransferase activity // inferred from mutant phenotype /// 0004379 // glycylpeptide N-tetradecanoyltransferase activity // not recorded /// 0004379 // glycylpeptide N-tetradecanoyltransferase activity // traceable author statement /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation /// 0019107 // myristoyltransferase activity // not recorded
1415684_at AV168389 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:AV168389 /DB_XREF=gi:16383543 /DB_XREF=AV168389 /CLONE=3110067M24 /FEA=FLmRNA /CNT=142 /TID=Mm.22264.1 /TIER=Stack /STK=28 /UG=Mm.22264 /LL=11793 /UG_GENE=Apg5l /UG_TITLE=autophagy 5-like (S. cerevisiae) /FL=gb:NM_053069.1 gb:BC002166.1 gb:AB048349.1 AV168389 autophagy related 5 Atg5 11793 NM_053069 /// XM_006512500 /// XM_006512501 0000045 // autophagic vacuole assembly // inferred from mutant phenotype /// 0001974 // blood vessel remodeling // inferred from mutant phenotype /// 0002376 // immune system process // inferred from electronic annotation /// 0002739 // regulation of cytokine secretion involved in immune response // inferred from mutant phenotype /// 0006914 // autophagy // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from electronic annotation /// 0009620 // response to fungus // inferred from mutant phenotype /// 0031397 // negative regulation of protein ubiquitination // inferred from mutant phenotype /// 0039689 // negative stranded viral RNA replication // inferred from mutant phenotype /// 0042311 // vasodilation // inferred from mutant phenotype /// 0042493 // response to drug // inferred from mutant phenotype /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0043687 // post-translational protein modification // inferred from direct assay /// 0045087 // innate immune response // inferred from electronic annotation /// 0048840 // otolith development // inferred from mutant phenotype /// 0055015 // ventricular cardiac muscle cell development // inferred from mutant phenotype /// 0060047 // heart contraction // inferred from mutant phenotype /// 1902017 // regulation of cilium assembly // inferred from mutant phenotype 0005737 // cytoplasm // inferred from direct assay /// 0005776 // autophagic vacuole // inferred from direct assay /// 0005776 // autophagic vacuole // not recorded /// 0005829 // cytosol // traceable author statement /// 0005930 // axoneme // inferred from direct assay /// 0016020 // membrane // not recorded /// 0034045 // pre-autophagosomal structure membrane // inferred from direct assay 0005515 // protein binding // inferred from physical interaction
1415685_at NM_133767 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:NM_133767.1 /DB_XREF=gi:19526983 /GEN=2410112O06Rik /FEA=FLmRNA /CNT=48 /TID=Mm.214594.1 /TIER=FL+Stack /STK=16 /UG=Mm.214594 /LL=76784 /DEF=Mus musculus RIKEN cDNA 2410112O06 gene (2410112O06Rik), mRNA. /PROD=RIKEN cDNA 2410112O06 /FL=gb:BC016590.1 gb:NM_133767.1 NM_133767 mitochondrial translational initiation factor 2 Mtif2 76784 NM_001282118 /// NM_001282119 /// NM_001282120 /// NM_133767 /// XM_006514891 /// XM_006514892 /// XM_006514893 /// XR_380987 0001732 // formation of translation initiation complex // inferred from sequence or structural similarity /// 0006184 // GTP catabolic process // inferred from electronic annotation /// 0006412 // translation // inferred from electronic annotation /// 0006413 // translational initiation // inferred from electronic annotation /// 0006446 // regulation of translational initiation // inferred from sequence or structural similarity /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0032790 // ribosome disassembly // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred by curator /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation /// 0008135 // translation factor activity, nucleic acid binding // inferred from sequence or structural similarity /// 0043024 // ribosomal small subunit binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // not recorded
1415686_at AV339290 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:AV339290 /DB_XREF=gi:6379342 /DB_XREF=AV339290 /CLONE=6430503H11 /FEA=FLmRNA /CNT=418 /TID=Mm.58771.1 /TIER=Stack /STK=12 /UG=Mm.58771 /LL=68365 /UG_GENE=Rab14 /UG_TITLE=RAB14, member RAS oncogene family /FL=gb:NM_026697.1 gb:BC025139.1 gb:BC009085.1 AV339290 RAB14, member RAS oncogene family Rab14 68365 NM_026697 0006184 // GTP catabolic process // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006895 // Golgi to endosome transport // inferred from mutant phenotype /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0007589 // body fluid secretion // not recorded /// 0008543 // fibroblast growth factor receptor signaling pathway // inferred from mutant phenotype /// 0009790 // embryo development // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0032456 // endocytic recycling // not recorded /// 0032880 // regulation of protein localization // not recorded /// 0045176 // apical protein localization // not recorded 0000139 // Golgi membrane // inferred from electronic annotation /// 0005622 // intracellular // inferred from mutant phenotype /// 0005622 // intracellular // not recorded /// 0005623 // cell // inferred from mutant phenotype /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005764 // lysosome // not recorded /// 0005765 // lysosomal membrane // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // not recorded /// 0005770 // late endosome // not recorded /// 0005791 // rough endoplasmic reticulum // not recorded /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005795 // Golgi stack // not recorded /// 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0030133 // transport vesicle // not recorded /// 0030140 // trans-Golgi network transport vesicle // not recorded /// 0030670 // phagocytic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation /// 0031901 // early endosome membrane // inferred from electronic annotation /// 0042175 // nuclear outer membrane-endoplasmic reticulum membrane network // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded /// 0045335 // phagocytic vesicle // not recorded /// 0048471 // perinuclear region of cytoplasm // not recorded /// 0055037 // recycling endosome // not recorded /// 0070062 // extracellular vesicular exosome // not recorded /// 0097208 // alveolar lamellar body // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0001948 // glycoprotein binding // not recorded /// 0003924 // GTPase activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // not recorded /// 0019003 // GDP binding // not recorded
1415687_a_at BM212050 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:BM212050 /DB_XREF=gi:17769443 /DB_XREF=C0816D10-3 /CLONE=C0816D10 /FEA=FLmRNA /CNT=332 /TID=Mm.3363.1 /TIER=Stack /STK=32 /UG=Mm.3363 /LL=19156 /UG_GENE=Psap /UG_TITLE=prosaposin /FL=gb:NM_011179.1 BM212050 prosaposin Psap 19156 NM_001146120 /// NM_001146121 /// NM_001146122 /// NM_001146123 /// NM_001146124 /// NM_011179 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006665 // sphingolipid metabolic process // inferred from electronic annotation /// 0019216 // regulation of lipid metabolic process // inferred from mutant phenotype /// 0043408 // regulation of MAPK cascade // inferred from mutant phenotype /// 0048589 // developmental growth // inferred from mutant phenotype /// 0060736 // prostate gland growth // inferred from mutant phenotype /// 0060742 // epithelial cell differentiation involved in prostate gland development // inferred from mutant phenotype /// 0071310 // cellular response to organic substance // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005739 // mitochondrion // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // not recorded
1415688_at NM_025985 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:NM_025985.1 /DB_XREF=gi:13385487 /GEN=2700059C12Rik /FEA=FLmRNA /CNT=161 /TID=Mm.18485.1 /TIER=FL+Stack /STK=79 /UG=Mm.18485 /LL=67128 /DEF=Mus musculus RIKEN cDNA 2700059C12 gene (2700059C12Rik), mRNA. /PROD=RIKEN cDNA 2700059C12 /FL=gb:NM_025985.1 NM_025985 ubiquitin-conjugating enzyme E2G 1 Ube2g1 67128 NM_025985 0016567 // protein ubiquitination // inferred from electronic annotation /// 0070534 // protein K63-linked ubiquitination // not recorded /// 0070936 // protein K48-linked ubiquitination // not recorded 0070062 // extracellular vesicular exosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein transferase activity // not recorded /// 0005524 // ATP binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0031625 // ubiquitin protein ligase binding // not recorded
1415689_s_at BC007473 Mus musculus Oct 6, 2014 Consensus sequence GenBank gb:BC007473.1 /DB_XREF=gi:13938632 /FEA=FLmRNA /CNT=131 /TID=Mm.29962.1 /TIER=FL+Stack /STK=38 /UG=Mm.29962 /LL=72739 /UG_GENE=Skz1-pending /DEF=Mus musculus, RIKEN cDNA 2810435N07 gene, clone MGC:6364 IMAGE:3496252, mRNA, complete cds. /PROD=RIKEN cDNA 2810435N07 gene /FL=gb:BC007473.1 gb:AF291722.1 gb:NM_023685.1 BC007473 zinc finger with KRAB and SCAN domains 3 Zkscan3 72739 NM_001145778 /// NM_023685 /// XM_006516789 /// XM_006516790 /// XM_006516791 /// XM_006516792 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006914 // autophagy // inferred from electronic annotation /// 0007040 // lysosome organization // not recorded /// 0010507 // negative regulation of autophagy // not recorded /// 0045892 // negative regulation of transcription, DNA-templated // not recorded /// 0045893 // positive regulation of transcription, DNA-templated // not recorded /// 2000773 // negative regulation of cellular senescence // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // not recorded /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0043565 // sequence-specific DNA binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation

Total number of rows: 22690

Table truncated, full table size 40112 Kbytes.






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