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GEO accession:
Series GSE42478
Query DataSets for GSE42478
Status
Public on Dec 20, 2012
Title
Defining a molecular roadmap of cellular reprogramming into iPS cells
Platform organisms
Homo sapiens
;
Mus musculus
;
Rattus norvegicus
;
Human alphaherpesvirus 1
;
Human alphaherpesvirus 2
;
Human betaherpesvirus 5
;
Murid betaherpesvirus 1
;
human gammaherpesvirus 4
;
JC polyomavirus
;
Human immunodeficiency virus 1
;
Murid gammaherpesvirus 4
;
Human gammaherpesvirus 8
;
Merkel cell polyomavirus
;
Betapolyomavirus hominis
;
Betapolyomavirus macacae
Sample organism
Mus musculus
Experiment type
Expression profiling by array
Non-coding RNA profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by genome tiling array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
23260147
Submission date
Nov 23, 2012
Last update date
May 15, 2019
Contact name
Ben S. Wittner
E-mail(s)
wittner.ben@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Center for Cancer Research
Lab
Lawrence
Street address
149 13th Street
City
Boston
State/province
MA
ZIP/Postal code
02129
Country
USA
Platforms (5)
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GPL8321
[Mouse430A_2] Affymetrix Mouse Genome 430A 2.0 Array
GPL8759
[HT_MG-430A] Affymetrix HT Mouse Genome 430A Array
GPL10283
Nimblegen Mouse 25K MM5_HELP_Promoter array
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL14957
Exiqon miRCURY LNA microRNA Array 5th generation (DesignedFor miRBase 14.0, CurrentVersion miRBase 16.0)
Samples (61)
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GSM1038591
KH2-MEF_m2 [mRNA]
GSM1038592
KH2-MEF_m3 [mRNA]
GSM1038593
Day3_Thy+ M2 [mRNA]
GSM1038594
Day3_Thy- M2 [mRNA]
GSM1038595
Day3_SSEA1+ M2 [mRNA]
GSM1038596
Day3_Thy+ M3 [mRNA]
GSM1038597
Day3_Thy- M3 [mRNA]
GSM1038598
Day3_SSEA1+ M3 [mRNA]
GSM1038599
Day6_Thy+ M2 [mRNA]
GSM1038600
Day6_Thy- M2 [mRNA]
GSM1038601
Day6_SSEA1+ M2 [mRNA]
GSM1038602
Day6_Thy+ M3 [mRNA]
GSM1038603
Day6_Thy- M3 [mRNA]
GSM1038604
Day6_SSEA1+ M3 [mRNA]
GSM1038605
Day9_Thy+ M2 [mRNA]
GSM1038606
Day9_Thy- M2 [mRNA]
GSM1038607
Day9_SSEA1+ M2 [mRNA]
GSM1038608
Day12_Thy+ M2 [mRNA]
GSM1038609
Day12_Thy- M2 [mRNA]
GSM1038610
Day12_SSEA1+ M2 [mRNA]
GSM1038611
Day12_GFP+ M2 [mRNA]
GSM1038612
iPS_KH2-SC_MEF_1-5 [mRNA]
GSM1038613
iPS_KH2-SC_MEF_1-6 [mRNA]
GSM1038614
iPS_KH2-SC_MEF_1-3 [mRNA]
GSM1040692
KH2-MEF_m2 [miRNA]
GSM1040693
KH2-MEF_m3 [miRNA]
GSM1040694
Day3_Thy+ M2 [miRNA]
GSM1040695
Day3_Thy- M2 [miRNA]
GSM1040696
Day3_SSEA1+ M2 [miRNA]
GSM1040697
Day6_Thy+ M2 [miRNA]
GSM1040698
Day6_Thy- M2 [miRNA]
GSM1040699
Day6_SSEA1+ M2 [miRNA]
GSM1040700
Day9_Thy+ M2 [miRNA]
GSM1040701
Day9_Thy- M2 [miRNA]
GSM1040702
Day9_SSEA1+ M2 [miRNA]
GSM1040703
Day12_Thy+ M2 [miRNA]
GSM1040704
Day12_Thy- M2 [miRNA]
GSM1040705
Day12_SSEA1+ M2 [miRNA]
GSM1040706
Day12_GFP+ M2 [miRNA]
GSM1040707
iPS_KH2-SC_MEF_1-5 [miRNA]
GSM1040708
iPS_KH2-SC_MEF_1-6 [miRNA]
GSM1040709
iPS_KH2-SC_MEF_1-3 [miRNA]
GSM1040716
KH2-MEF_m2 K27
GSM1040717
KH2-MEF_m2 K4
GSM1040718
Day3_SSEA1+ M2 K27
GSM1040719
Day3_SSEA1+ M2 K4
GSM1040720
Day9_SSEA1+ M2 K27
GSM1040721
Day9_SSEA1+ M2 K4
GSM1040722
Day12_GFP+ M2 K27
GSM1040723
Day12_GFP+ M2 K4
GSM1040724
iPS_KH2-SC_MEF_1-5 K27
GSM1040725
iPS_KH2-SC_MEF_1-5 K4
GSM1049452
Day6_SSEA1+EpCAM- 1
GSM1049453
Day6_SSEA1+EpCAM- 2
GSM1049454
Day6_SSEA1+EpCAM+ 1
GSM1049455
Day6_SSEA1+EpCAM+ 2
GSM1099769
Day_0
GSM1099770
Day_3
GSM1099771
Day_6
GSM1099772
Day_9
GSM1099773
iPSC
This SuperSeries is composed of the following SubSeries:
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GSE42379
Defining a molecular roadmap of cellular reprogramming into iPS cells [mRNA profiling]
GSE42475
Defining a molecular roadmap of cellular reprogramming into iPS cells [miRNA profiling]
GSE42477
Defining a molecular roadmap of cellular reprogramming into iPS cells [ChIP-Seq]
GSE45248
Defining a molecular roadmap of cellular reprogramming into iPS Cells [DNA methylation]
Relations
BioProject
PRJNA182083
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE42478_RAW.tar
6.4 Gb
(http)
(custom)
TAR (of BIGWIG, CEL, PAIR, TXT)
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