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Status
Public on Sep 24, 2005
Title
Agilent-013384 Yeast Oligo Microarray (V2) G4140B (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Saccharomyces cerevisiae
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4140B
Description
This oligonucleotide microarray will enable researchers to simultaneously characterize expression of many thousands of yeast genes and identify gene activity during important biological processes, such as yeast growth, adaptation, response to drug candidates and reproduction. Replaces 011447, G4140A. Arrays of this design have barcodes that begin with 16013384 or 2513384. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7293.
Submission date
Sep 23, 2005
Last update date
Sep 07, 2013
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com
Phone
877-424-4536
URL
http://www.agilent.com
Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (432)
GSM88155 , GSM88162 , GSM88163 , GSM88164 , GSM88165 , GSM88166
GSM88167 ,
GSM88168 ,
GSM88169 ,
GSM88170 ,
GSM88172 ,
GSM88189 ,
GSM113465 ,
GSM113466 ,
GSM113597 ,
GSM113598 ,
GSM113599 ,
GSM113600 ,
GSM113601 ,
GSM113602 ,
GSM113603 ,
GSM113604 ,
GSM113605 ,
GSM113606 ,
GSM144460 ,
GSM146266 ,
GSM146267 ,
GSM146268 ,
GSM189538 ,
GSM189539 ,
GSM189540 ,
GSM189541 ,
GSM189542 ,
GSM189543 ,
GSM189544 ,
GSM189545 ,
GSM189546 ,
GSM189547 ,
GSM189548 ,
GSM189549 ,
GSM189550 ,
GSM189551 ,
GSM189552 ,
GSM189553 ,
GSM189554 ,
GSM189555 ,
GSM189556 ,
GSM189557 ,
GSM189558 ,
GSM189559 ,
GSM189560 ,
GSM189561 ,
GSM189562 ,
GSM189563 ,
GSM189564 ,
GSM189565 ,
GSM189566 ,
GSM189567 ,
GSM189568 ,
GSM189569 ,
GSM189570 ,
GSM189571 ,
GSM189572 ,
GSM189573 ,
GSM189574 ,
GSM189575 ,
GSM189576 ,
GSM189577 ,
GSM189578 ,
GSM189579 ,
GSM229990 ,
GSM229993 ,
GSM230003 ,
GSM238074 ,
GSM238075 ,
GSM238076 ,
GSM238077 ,
GSM238078 ,
GSM238079 ,
GSM238080 ,
GSM238081 ,
GSM238082 ,
GSM238083 ,
GSM238084 ,
GSM238085 ,
GSM238086 ,
GSM238087 ,
GSM238088 ,
GSM238089 ,
GSM238091 ,
GSM238092 ,
GSM238093 ,
GSM238094 ,
GSM238095 ,
GSM238096 ,
GSM238097 ,
GSM238098 ,
GSM238100 ,
GSM238101 ,
GSM238102 ,
GSM238103 ,
GSM238104 ,
GSM238105 ,
GSM238106 ,
GSM238108 ,
GSM238109 ,
GSM238110 ,
GSM238111 ,
GSM238112 ,
GSM238113 ,
GSM238114 ,
GSM238115 ,
GSM238116 ,
GSM238118 ,
GSM238120 ,
GSM238121 ,
GSM238122 ,
GSM238123 ,
GSM238124 ,
GSM238125 ,
GSM238126 ,
GSM238127 ,
GSM238128 ,
GSM238130 ,
GSM238131 ,
GSM238133 ,
GSM238135 ,
GSM238136 ,
GSM238137 ,
GSM238138 ,
GSM238139 ,
GSM238140 ,
GSM238141 ,
GSM238142 ,
GSM238143 ,
GSM238144 ,
GSM238145 ,
GSM238146 ,
GSM238147 ,
GSM238148 ,
GSM238150 ,
GSM238151 ,
GSM238152 ,
GSM238153 ,
GSM238154 ,
GSM238155 ,
GSM238156 ,
GSM238157 ,
GSM238158 ,
GSM238159 ,
GSM238160 ,
GSM238161 ,
GSM238162 ,
GSM238163 ,
GSM238164 ,
GSM238165 ,
GSM238166 ,
GSM238167 ,
GSM238168 ,
GSM238169 ,
GSM238170 ,
GSM238171 ,
GSM238173 ,
GSM238175 ,
GSM238176 ,
GSM238177 ,
GSM238178 ,
GSM238179 ,
GSM238180 ,
GSM238181 ,
GSM238182 ,
GSM238183 ,
GSM238184 ,
GSM238185 ,
GSM238186 ,
GSM238187 ,
GSM238188 ,
GSM238189 ,
GSM238190 ,
GSM238191 ,
GSM238192 ,
GSM238193 ,
GSM238194 ,
GSM238196 ,
GSM238197 ,
GSM238198 ,
GSM238199 ,
GSM238200 ,
GSM238201 ,
GSM238202 ,
GSM238203 ,
GSM238205 ,
GSM238206 ,
GSM238207 ,
GSM238208 ,
GSM238209 ,
GSM238210 ,
GSM238211 ,
GSM238212 ,
GSM238213 ,
GSM238214 ,
GSM238215 ,
GSM238216 ,
GSM238217 ,
GSM238218 ,
GSM238219 ,
GSM238220 ,
GSM238221 ,
GSM238222 ,
GSM238223 ,
GSM238224 ,
GSM238225 ,
GSM238226 ,
GSM238227 ,
GSM238228 ,
GSM238229 ,
GSM238230 ,
GSM238231 ,
GSM238233 ,
GSM238234 ,
GSM238235 ,
GSM238237 ,
GSM238238 ,
GSM238239 ,
GSM238240 ,
GSM238241 ,
GSM238242 ,
GSM238243 ,
GSM238244 ,
GSM238245 ,
GSM238246 ,
GSM238248 ,
GSM238249 ,
GSM238250 ,
GSM238251 ,
GSM238252 ,
GSM238253 ,
GSM238254 ,
GSM238255 ,
GSM238256 ,
GSM238257 ,
GSM238258 ,
GSM238259 ,
GSM238260 ,
GSM238261 ,
GSM238262 ,
GSM238263 ,
GSM238264 ,
GSM238265 ,
GSM238266 ,
GSM238267 ,
GSM238270 ,
GSM238271 ,
GSM238273 ,
GSM238274 ,
GSM238275 ,
GSM238276 ,
GSM238277 ,
GSM238278 ,
GSM238279 ,
GSM238280 ,
GSM238281 ,
GSM238282 ,
GSM238283 ,
GSM238284 ,
GSM238285 ,
GSM238286 ,
GSM238287 ,
GSM238288 ,
GSM238289 ,
GSM238290 ,
GSM238291 ,
GSM238292 ,
GSM238294 ,
GSM238295 ,
GSM238296 ,
GSM238297 ,
GSM238298 ,
GSM238299 ,
GSM238300 ,
GSM238304 ,
GSM238306 ,
GSM238307 ,
GSM238308 ,
GSM238309 ,
GSM238310 ,
GSM238311 ,
GSM238312 ,
GSM238314 ,
GSM238316 ,
GSM238317 ,
GSM238318 ,
GSM238319 ,
GSM280154 ,
GSM280155 ,
GSM280156 ,
GSM280157 ,
GSM280158 ,
GSM280159 ,
GSM280160 ,
GSM280161 ,
GSM280162 ,
GSM287511 ,
GSM287512 ,
GSM287513 ,
GSM290977 ,
GSM290978 ,
GSM290979 ,
GSM290980 ,
GSM290981 ,
GSM290982 ,
GSM290983 ,
GSM290984 ,
GSM290985 ,
GSM290986 ,
GSM290987 ,
GSM290988 ,
GSM315812 ,
GSM315814 ,
GSM315819 ,
GSM315820 ,
GSM315821 ,
GSM315822 ,
GSM315823 ,
GSM315824 ,
GSM315825 ,
GSM315826 ,
GSM315827 ,
GSM315828 ,
GSM315829 ,
GSM315830 ,
GSM315831 ,
GSM315832 ,
GSM315833 ,
GSM315834 ,
GSM315835 ,
GSM315836 ,
GSM315837 ,
GSM315838 ,
GSM315839 ,
GSM315840 ,
GSM325528 ,
GSM325529 ,
GSM325530 ,
GSM325531 ,
GSM325532 ,
GSM339026 ,
GSM339027 ,
GSM339028 ,
GSM339029 ,
GSM339030 ,
GSM339031 ,
GSM339048 ,
GSM339051 ,
GSM339052 ,
GSM339053 ,
GSM339056 ,
GSM339057 ,
GSM339058 ,
GSM339059 ,
GSM339060 ,
GSM339061 ,
GSM339062 ,
GSM339063 ,
GSM339064 ,
GSM339065 ,
GSM339066 ,
GSM339067 ,
GSM339068 ,
GSM339069 ,
GSM339070 ,
GSM339071 ,
GSM339075 ,
GSM339083 ,
GSM339084 ,
GSM339089 ,
GSM339090 ,
GSM339091 ,
GSM339092 ,
GSM339093 ,
GSM339094 ,
GSM339108 ,
GSM339109 ,
GSM339110 ,
GSM339111 ,
GSM339112 ,
GSM339113 ,
GSM339114 ,
GSM339115 ,
GSM339116 ,
GSM339117 ,
GSM339118 ,
GSM339119 ,
GSM339120 ,
GSM339121 ,
GSM339122 ,
GSM339123 ,
GSM339124 ,
GSM339125 ,
GSM339126 ,
GSM339127 ,
GSM339128 ,
GSM339129 ,
GSM339130 ,
GSM339133 ,
GSM339134 ,
GSM339141 ,
GSM339142 ,
GSM339160 ,
GSM339162 ,
GSM339163 ,
GSM339166 ,
GSM339167 ,
GSM339168 ,
GSM339170 ,
GSM339173 ,
GSM339174 ,
GSM339177 ,
GSM339178 ,
GSM339179 ,
GSM339181 ,
GSM339183 ,
GSM339184 ,
GSM374298 ,
GSM374299 ,
GSM374300 ,
GSM374301 ,
GSM374302 ,
GSM1039694 ,
GSM1039695 ,
GSM1039696 ,
GSM1039697
Series (15)
GSE3853
Transcriptome response to the deletion of Gcr1, Nup84 or Nup84 & Gcr1 (double deletion)
GSE5027
Transcriptome response to gcr1 deletion in raffinose, galactose, and glucose
GSE6278
Global Mapping of Transposon Location
GSE6316
Role of Histone Ubiquitylation and Deubiquitylation as Determined by the Analysis of an HTB1_K123R S. cerevisiae Strain
GSE7812
Effects of aneuploidy on cellular physiology and cell division in haploid yeast.
GSE9095
Yeast linker histone HHO1p effect on transcription before and after heat shock
GSE9376
Gene-environment interaction in yeast gene expression
GSE11111
Integrating Large-Scale Functional Genomic Data to Dissect the Complexity of Yeast Regulatory Networks
GSE11380
Regulation by the homologous Ace2 and Swi5 factors of Saccharomyces cerevisiae
GSE11754
Transcriptional responses of Saccharomyces cerevisiae to carbon and nitrogen deprivation
GSE12602
Adaptation to hydrogen peroxide
GSE12994
Signature gene expression profiles for cytokinesis mutants in the budding yeast Saccharomyces cerevisiae
GSE13435
The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast
GSE14991
Time course of Saccharomyces cerevisiae Exposed to Arsenic under Phosphate Limited Conditions
GSE42418
Expression analysis of novel and known antifungal drugs using S. cerevisiae as a model
Relations
Alternative to
GPL7293
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
Name
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
ORF
GENE_SYMBOL
Gene Symbol
ACCESSION_STRING
Accession String
DESCRIPTION
Description
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
ORF
GENE_SYMBOL
ACCESSION_STRING
DESCRIPTION
1
101
107
BrightCorner
BrightCorner
pos
2
101
106
NegativeControl
NegativeControl
neg
3
101
105
YDR456W
A_06_P2449
FALSE
YDR456W
NHX1
sgd|YDR456W
BioProcess=vacuolar acidification*|MolFunction=monovalent inorganic cation transporter|CellComponent=late endosome
4
101
104
YPR189W
A_06_P7237
FALSE
YPR189W
SKI3
sgd|YPR189W
BioProcess=mRNA catabolism|MolFunction=molecular_function unknown|CellComponent=not yet annotated
5
101
103
YEL055C
A_06_P2596
FALSE
YEL055C
POL5
sgd|YEL055C
BioProcess=DNA dependent DNA replication|MolFunction=DNA-directed DNA polymerase|CellComponent=nucleolus
6
101
102
YOR200W
A_06_P6562
FALSE
YOR200W
ORF:YOR200W
sgd|YOR200W
BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated
7
101
101
YLR094C
A_06_P4906
FALSE
YLR094C
GIS3
sgd|YLR094C
BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=cellular_component unknown
8
101
100
E1A_r60_n11
E1A_r60_n11
pos
9
101
99
YPL227C
A_06_P6987
FALSE
YPL227C
ALG5
sgd|YPL227C
BioProcess=not yet annotated|MolFunction=dolichyl-phosphate beta-glucosyltransferase|CellComponent=not yet annotated
10
101
98
YLR378C
A_06_P5196
FALSE
YLR378C
SEC61
sgd|YLR378C
BioProcess=SRP-dependent, co-translational membrane targeting, translocation|MolFunction=transporter|CellComponent=endoplasmic reticulum membrane*
11
101
97
YDR513W
A_06_P2506
FALSE
YDR513W
TTR1
sgd|YDR513W
BioProcess=response to oxidative stress*|MolFunction=thiol-disulfide exchange intermediate|CellComponent=cellular_component unknown
12
101
96
YJR014W
A_06_P4261
FALSE
YJR014W
ORF:YJR014W
sgd|YJR014W
BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated
13
101
95
YLR006C
A_06_P4818
FALSE
YLR006C
SSK1
sgd|YLR006C
BioProcess=osmosensory signaling pathway via two-component system|MolFunction=enzyme activator*|CellComponent=cellular_component unknown
14
101
94
YDL126C
A_06_P1857
FALSE
YDL126C
CDC48
sgd|YDL126C
BioProcess=ubiquitin-dependent protein catabolism*|MolFunction=adenosinetriphosphatase|CellComponent=nucleus*
15
101
93
E1A_r60_a104
E1A_r60_a104
pos
16
101
92
YDL103C
A_06_P1833
FALSE
YDL103C
QRI1
sgd|YDL103C
BioProcess=UDP-N-acetylglucosamine biosynthesis|MolFunction=UDP-N-acetylglucosamine pyrophosphorylase|CellComponent=not yet annotated
17
101
91
Q0182
A_06_P1019
FALSE
Q0182
ORF:Q0182
sgd|Q0182
BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated
18
101
90
YBR143C
A_06_P1395
FALSE
YBR143C
SUP45
sgd|YBR143C
BioProcess=translational termination|MolFunction=translation release factor, codon specific|CellComponent=cytosol
19
101
89
YCR031C
A_06_P1656
FALSE
YCR031C
RPS14A
sgd|YCR031C
BioProcess=protein biosynthesis*|MolFunction=structural constituent of ribosome*|CellComponent=cytosolic small ribosomal subunit (sensu Eukarya)
20
101
88
YMR172C-A
A_06_P5607
FALSE
YMR172C-A
ORF:YMR172C-A
sgd|YMR172C-A
BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated
Total number of rows: 10807 Table truncated, full table size 1755 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL2883_old_annotations.txt.gz
321.8 Kb
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TXT