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Platform GPL2883 Query DataSets for GPL2883
Status Public on Sep 24, 2005
Title Agilent-013384 Yeast Oligo Microarray (V2) G4140B (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Saccharomyces cerevisiae
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4140B
 
Description
This oligonucleotide microarray will enable researchers to simultaneously characterize expression of many thousands of yeast genes and identify gene activity during important biological processes, such as yeast growth, adaptation, response to drug candidates and reproduction. Replaces 011447, G4140A.

Arrays of this design have barcodes that begin with 16013384 or 2513384.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7293.
 
Submission date Sep 23, 2005
Last update date Sep 07, 2013
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (432) GSM88155, GSM88162, GSM88163, GSM88164, GSM88165, GSM88166 
Series (15)
GSE3853 Transcriptome response to the deletion of Gcr1, Nup84 or Nup84 & Gcr1 (double deletion)
GSE5027 Transcriptome response to gcr1 deletion in raffinose, galactose, and glucose
GSE6278 Global Mapping of Transposon Location
Relations
Alternative to GPL7293

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ORF
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
DESCRIPTION Description

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ORF GENE_SYMBOL ACCESSION_STRING DESCRIPTION
1 101 107 BrightCorner BrightCorner pos
2 101 106 NegativeControl NegativeControl neg
3 101 105 YDR456W A_06_P2449 FALSE YDR456W NHX1 sgd|YDR456W BioProcess=vacuolar acidification*|MolFunction=monovalent inorganic cation transporter|CellComponent=late endosome
4 101 104 YPR189W A_06_P7237 FALSE YPR189W SKI3 sgd|YPR189W BioProcess=mRNA catabolism|MolFunction=molecular_function unknown|CellComponent=not yet annotated
5 101 103 YEL055C A_06_P2596 FALSE YEL055C POL5 sgd|YEL055C BioProcess=DNA dependent DNA replication|MolFunction=DNA-directed DNA polymerase|CellComponent=nucleolus
6 101 102 YOR200W A_06_P6562 FALSE YOR200W ORF:YOR200W sgd|YOR200W BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated
7 101 101 YLR094C A_06_P4906 FALSE YLR094C GIS3 sgd|YLR094C BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=cellular_component unknown
8 101 100 E1A_r60_n11 E1A_r60_n11 pos
9 101 99 YPL227C A_06_P6987 FALSE YPL227C ALG5 sgd|YPL227C BioProcess=not yet annotated|MolFunction=dolichyl-phosphate beta-glucosyltransferase|CellComponent=not yet annotated
10 101 98 YLR378C A_06_P5196 FALSE YLR378C SEC61 sgd|YLR378C BioProcess=SRP-dependent, co-translational membrane targeting, translocation|MolFunction=transporter|CellComponent=endoplasmic reticulum membrane*
11 101 97 YDR513W A_06_P2506 FALSE YDR513W TTR1 sgd|YDR513W BioProcess=response to oxidative stress*|MolFunction=thiol-disulfide exchange intermediate|CellComponent=cellular_component unknown
12 101 96 YJR014W A_06_P4261 FALSE YJR014W ORF:YJR014W sgd|YJR014W BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated
13 101 95 YLR006C A_06_P4818 FALSE YLR006C SSK1 sgd|YLR006C BioProcess=osmosensory signaling pathway via two-component system|MolFunction=enzyme activator*|CellComponent=cellular_component unknown
14 101 94 YDL126C A_06_P1857 FALSE YDL126C CDC48 sgd|YDL126C BioProcess=ubiquitin-dependent protein catabolism*|MolFunction=adenosinetriphosphatase|CellComponent=nucleus*
15 101 93 E1A_r60_a104 E1A_r60_a104 pos
16 101 92 YDL103C A_06_P1833 FALSE YDL103C QRI1 sgd|YDL103C BioProcess=UDP-N-acetylglucosamine biosynthesis|MolFunction=UDP-N-acetylglucosamine pyrophosphorylase|CellComponent=not yet annotated
17 101 91 Q0182 A_06_P1019 FALSE Q0182 ORF:Q0182 sgd|Q0182 BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated
18 101 90 YBR143C A_06_P1395 FALSE YBR143C SUP45 sgd|YBR143C BioProcess=translational termination|MolFunction=translation release factor, codon specific|CellComponent=cytosol
19 101 89 YCR031C A_06_P1656 FALSE YCR031C RPS14A sgd|YCR031C BioProcess=protein biosynthesis*|MolFunction=structural constituent of ribosome*|CellComponent=cytosolic small ribosomal subunit (sensu Eukarya)
20 101 88 YMR172C-A A_06_P5607 FALSE YMR172C-A ORF:YMR172C-A sgd|YMR172C-A BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated

Total number of rows: 10807

Table truncated, full table size 1755 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL2883_old_annotations.txt.gz 321.8 Kb (ftp)(http) TXT

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