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Sample GSM339093 Query DataSets for GSM339093
Status Public on Nov 08, 2008
Title Ag-D-CEN.PK-1N-D-g162-c1-DNA
Sample type genomic
 
Channel 1
Source name 9500 MATalpha (Strain Name : CEN.PK haploid)
Organism Saccharomyces cerevisiae
Characteristics Strain Name : CEN.PK haploid
Biomaterial provider Cheryl Christianson, Dunham Lab, Princeton University
Extracted molecule genomic DNA
Extraction protocol Extracted molecule : Genomic DNA
Extraction method : Hoffman-Winston prep http://genomics.princeton.edu/dunham/MDyeastDNAprep.pdf
Label Cy3
Label protocol reference URL : http://genomics.princeton.edu/dunham/MDAgilentDNA.pdf
 
Channel 2
Source name F14 5/20/06 c1 (Strain Name : G6 c1)
Organism Saccharomyces cerevisiae
Characteristics Strain Name : G6 c1
Biomaterial provider Cheryl Christianson, Dunham Lab, Princeton University
Extracted molecule genomic DNA
Extraction protocol Extracted molecule : Genomic DNA
Extraction method : Hoffman-Winston prep http://genomics.princeton.edu/dunham/MDyeastDNAprep.pdf
Label Cy5
Label protocol reference URL : http://genomics.princeton.edu/dunham/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL : http://genomics.princeton.edu/dunham/MDAgilentDNA.pdf
Scan protocol Pixel Size : 10
Scan Date : 2006-08-04
Scan Time : 10:40:02
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.6.3.1
Description Experiment design: DNA from each evolved clone or population is hybridized vs DNA from the matched ancestor strain
Complete protocols also available as supplementary files on the Series record
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : A.7.5.1
Datafile type : Agilent result file
 
Submission date Nov 03, 2008
Last update date Nov 07, 2008
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL2883
Series (1)
GSE13435 The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -6.644 10.49237 44801.31 39.05172 13899.6
2 0 8.924848 7.93044 28.29825 21.31579
3 -.072 889.3534 935.1701 562 314.25
4 -.162 506.4367 566.54 339.1754 197.1404
5 .027 648.323 636.52 421.875 220.3036
6 -.105 661.5208 711.3365 428.6094 244.2656
7 -.052 907.6435 940.656 573.9828 316.3276
8 0 7.590271 8.523956 37.76271 26.20339
9 .076 499.8906 474.2042 337.2623 168.9836
10 -.058 824.1548 857.8146 524.1552 291.3793
11 -.141 677.1967 746.5761 438.5484 256.0645
12 .111 1473.377 1364.192 920.3051 444.3729
13 .025 581.4845 571.6475 385.5862 200.2586
14 .115 661.8368 611.1316 432.3934 213.4098
15 -.221 17.07212 19.89926 46.05357 31.375
16 -.021 678.4652 688.224 441.5091 238.2727
17 -.185 4095.202 4654.255 2515.367 1446.7
18 .029 559.3786 548.2958 374.5667 193.4833
19 -.008 846.9228 851.6351 540.5965 290.5965
20 -.095 688.683 735.5866 448.3091 253.9091

Total number of rows: 10789

Table truncated, full table size 479 Kbytes.




Supplementary file Size Download File type/resource
GSM339093.txt.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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