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Sample GSM238169 Query DataSets for GSM238169
Status Public on Apr 15, 2008
Title 40g 7_7_c YLK258 2% glu
Sample type RNA
 
Channel 1
Source name 40g 7_7_c YLK258 2% glu
Organism Saccharomyces cerevisiae
Characteristics Strain Name : 7_7_c
Biomaterial provider Erin Smith, Kruglyak Lab, Princeton University
Growth protocol media : "glucose carbon source: 6.7g/L YNB (Sigma Y0626), 20g/L glucose, 100 mg/L leucine, 100mg/L lysine, 20mg/L uracil"
Extracted molecule total RNA
Extraction protocol Extraction method : "Hot acid/phenol, Qiagen Rneasy Kit"
Label Cy3
Label protocol Type of label : Cy3
Low RNA Input Fluorescent Linear Amplification Kit Protocol, Version 4, January 2006, Agilent Technologies, Publication 5185-58
 
Channel 2
Source name BYg+RMg+BYE+RME
Organism Saccharomyces cerevisiae
Characteristics Strain Name : common reference: mixture of BY4716 and RM11-1a RNA from glucose and ethanol conditions
Biomaterial provider Erin Smith, Kruglyak Lab, Princeton University
Growth protocol media : common reference: mixture of BY4716 and RM11-1a RNA from glucose and ethanol conditions
Extracted molecule total RNA
Extraction protocol Extraction method : "Hot acid/phenol, Qiagen Rneasy Kit"
Label Cy5
Label protocol Type of label : Cy5
Low RNA Input Fluorescent Linear Amplification Kit Protocol, Version 4, January 2006, Agilent Technologies, Publication 5185-58
 
 
Hybridization protocol Hybridization date : 2005-12-14
Two-Color Microarray-Based Gene Expression Analysis v.5.5, Agilent Technologies, Publication G4140-90050 V.5.5
Scan protocol Pixel Size : 10
Scan Date : 2005-12-14
Scan Time : 13:16:48
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.6.3.1
Description 40g 7_7_c YLK258 2% glu
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : Unknown
Datafile type : Agilent result file
 
Submission date Oct 17, 2007
Last update date Aug 14, 2011
Contact name Erin N Smith
E-mail(s) ensmith@princeton.edu
Organization name Princeton University
Department Ecology and Evolutionary Biology
Lab Kruglyak
Street address 110 Carl Icahn Labs
City Princeton
State/province NJ
ZIP/Postal code 08544
Country USA
 
Platform ID GPL2883
Series (1)
GSE9376 Gene-environment interaction in yeast gene expression

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 10.433 25.76708 35626.37 30.49123 4602.018
2 0 26.52601 23.84751 27.77778 29.66667
3 0.274 1325.248 1602.113 241.1 240.0667
4 0.024 708.5118 720.6367 145.3966 120.7414
5 0.802 1429.934 2493.159 254.6667 362.5439
6 -0.575 76.18887 51.145 40.45614 34.98246
7 -1.126 278.196 127.502 74.8 44.49091
8 0.353 239.5764 305.957 68.40678 66.84746
9 0.776 697.5154 1194.443 142.7455 182.6182
10 0.685 4815.427 7741.898 758.5 1113.393
11 -0.162 1239.801 1108.153 230.0164 172.9672
12 -0.175 3100.893 2746.356 511.629 402.7903
13 0.241 201.446 238.08 61.98333 58.38333
14 -0.483 26228.39 18767.06 3741.694 2846.742
15 0 23.52479 23.8386 28.66667 29.42105
16 -0.162 2997.986 2679.876 496.0536 393.4286
17 0.397 220.7653 290.7434 65.33929 65
18 0.4 5725.355 7552.262 893.8197 1090.361
19 0.648 4398.204 6890.914 698.1964 990.0536
20 0 24.47198 21.61455 31.83333 30.03333

Total number of rows: 10789

Table truncated, full table size 486 Kbytes.




Supplementary file Size Download File type/resource
GSM238169.txt.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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