NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM88166 Query DataSets for GSM88166
Status Public on Aug 22, 2007
Title yeast_nup84 null vs WT_glucose_rep2
Sample type RNA
 
Channel 1
Source name nup84 null, 2% glucose
Organism Saccharomyces cerevisiae
Characteristics nup84 null reporter strain (NJS10) from S288C background; grown to early-mid log in YEPD at 23 degrees Celcius
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name wild type, 2% glucose
Organism Saccharomyces cerevisiae
Characteristics wild type reporter strain (NJS2) from S288C background; grown to early-mid log in YPD at 23 degrees Celcius
Extracted molecule total RNA
Label Cy3
 
 
Description labeling done with Agilent's Low RNA Input Linear Amp kit; hybridization and slide processing done according to Agilent instructions
Data processing log2 ratio after ratio-based and LOWESS normalization in Acuity 4.0
 
Submission date Dec 16, 2005
Last update date Aug 23, 2006
Contact name Kellie Barbara
E-mail(s) kellie.barbara@gmail.com
Organization name Univ. of Southern MS
Department Biological Sciences
Lab Santangelo Lab
Street address 118 College Dr. #5018
City Hattiesburg
State/province MS
ZIP/Postal code 39406
Country USA
 
Platform ID GPL2883
Series (1)
GSE3853 Transcriptome response to the deletion of Gcr1, Nup84 or Nup84 & Gcr1 (double deletion)

Data table header descriptions
ID_REF
VALUE ratio-based and LOWESS normalized log2 ratio
F635 Mean - B635 channel 1 mean minus background
F532 Mean - B532 channel 2 mean minus background

Data table
ID_REF VALUE F635 Mean - B635 F532 Mean - B532
1 -9.594 7 4672
2 -1.293 9 21
3 -0.149 115 114
4 -0.193 62 62
5 -0.084 193 188
6 -1.123 8 19
7 0.054 56 47
8 0.015 278 107
9 -0.804 124 198
10 -0.463 269 344
11 0.364 172 126
12 -0.222 283 303
13 0.061 26 22
14 0.764 2913 1576
15 -0.608 10 16
16 0.351 377 269
17 0.346 18 14
18 -1.473 439 1149
19 -1.248 527 878
20 -1.123 8 15

Total number of rows: 10807

Table truncated, full table size 193 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap