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Sample GSM290979 Query DataSets for GSM290979
Status Public on Feb 02, 2009
Title C-1
Sample type RNA
 
Channel 1
Source name Pre-starvation
Organism Saccharomyces cerevisiae
Characteristics Strain Name : FY4
Biomaterial provider Matt Brauer, Botstein Lab, Lewis-Sigler Institute, Princeton University
Growth protocol media : YNB with glucose and ammonium
Extracted molecule total RNA
Extraction protocol Extraction method : Qiagen Rneasy Kit
Label Cy3
Label protocol Type of label : Cy3
reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
Channel 2
Source name Carbon-starved 1 hr
Organism Saccharomyces cerevisiae
Characteristics Strain Name : FY4
Biomaterial provider Matt Brauer, Botstein Lab, Lewis-Sigler Institute, Princeton University
Treatment protocol Time : 1h
Growth protocol media : YNB/agarose with ammonium and no glucose
Extracted molecule total RNA
Extraction protocol Extraction method : Qiagen Rneasy Kit
Label Cy5
Label protocol Type of label : Cy5
reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
 
Hybridization protocol reference URL : http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=48835
Scan protocol Pixel Size : 10
Scan Date : 2006-01-21
Scan Time : 13:43:42
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.6.3.1
Description Agilent_2513384_10136_01_supplement.txt
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : A.7.5.1
Datafile type : Agilent result file
 
Submission date May 24, 2008
Last update date Feb 02, 2009
Contact name Patrick H Bradley
E-mail(s) patrick.bradley@gmail.com
URL http://genomics.princeton.edu/~pjbradle
Organization name Princeton University
Department Molecular Biology
Lab Rabinowitz and Troyanskaya Labs
Street address 119 Lewis Thomas Labs
City Princeton
State/province NJ
ZIP/Postal code 08544
Country USA
 
Platform ID GPL2883
Series (1)
GSE11754 Transcriptional responses of Saccharomyces cerevisiae to carbon and nitrogen deprivation

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -6.644 386.9981 71586.41 30.75439 21581.86
2 0 48.76373 71.04439 27.33871 28.43548
3 -.459 498.6153 685.3951 34.16949 195.6102
4 -.79 230.4797 398.5849 30.13793 109.1552
5 -.39 1278.823 1676.274 45.82759 491.8621
6 2.833 266.5643 37.39695 36 31.45
7 .873 264.2517 144.2782 32.38333 51.21667
8 0 42.24952 78.72132 26.18033 29.04918
9 -1.107 416.1979 896.4929 32.83051 249.4068
10 -.39 1173.97 1538.399 44.46032 450.6349
11 1.564 512.2103 173.2789 36.61667 62.83333
12 -.781 1030.105 1770.629 42.17544 514.7544
13 -.213 93.80184 108.71 28.25455 38.25455
14 -.908 4400.803 8255.963 90.63462 2525.692
15 0 46.71207 69.48879 26.42857 29.98413
16 .254 1276.877 1071.039 46.59322 318.1695
17 5.41 1827.498 42.98512 66.71429 36.14286
18 .274 4897.925 4051.8 98.90909 1239.891
19 -.882 1402.817 2585.483 47.80702 758.3509
20 3.812 421.9592 30.03947 41.52381 31.20635

Total number of rows: 10789

Table truncated, full table size 480 Kbytes.




Supplementary file Size Download File type/resource
GSM290979.txt.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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